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Aliases for CFAP58-DT Gene

Subcategory (RNA class) for CFAP58-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CFAP58-DT Gene

  • CFAP58 Divergent Transcript 2 3
  • CFAP58 Antisense RNA 1 (Head To Head) 2 3 5
  • CCDC147 Antisense RNA 1 (Head To Head) 2 3
  • CFAP58-AS1 3 5
  • CCDC147 Antisense RNA 1 2
  • CCDC147-AS1 3

External Ids for CFAP58-DT Gene

Previous HGNC Symbols for CFAP58-DT Gene

  • CCDC147-AS1
  • CFAP58-AS1

Summaries for CFAP58-DT Gene

GeneCards Summary for CFAP58-DT Gene

CFAP58-DT (CFAP58 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CFAP58-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP58-DT Gene

Genomics for CFAP58-DT Gene

GeneHancer (GH) Regulatory Elements for CFAP58-DT Gene

Promoters and enhancers for CFAP58-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J104316 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.3 +24.8 24804 24.8 FEZF1 YY1 ZNF213 ZNF143 ZNF548 SP3 MEF2D ZNF610 GLIS1 NBN ITPRIP CFAP58 GSTO2 PDCD11 SFR1 CFAP58-DT PCGF6 TAF5 ENSG00000260461 GSTO1
GH10J104249 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.8 +99.9 99858 7.6 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 GSTO1 GSTO2 ENSG00000260461 PDCD11 CFAP58 CFAP58-DT GC10M104249 MIR4482
GH10J104267 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 10.7 +85.0 85046 2.8 HDGF PKNOX1 SIN3A ZNF2 BRCA1 YY1 ETS1 ZNF207 ZNF143 FOS GSTO2 MIR4482 CFAP43 PDCD11 TAF5 GSTO1 PCGF6 CFAP58 CFAP58-DT GC10P104302
GH10J104274 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 12.1 +78.4 78415 1.7 CLOCK MZF1 SIN3A KLF5 RAD21 YY1 ZNF335 ZNF121 GLIS2 ZNF143 GSTO2 GSTO1 ENSG00000260461 PDCD11 CFAP58 CFAP58-DT GC10P104302
GH10J104303 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.5 +47.3 47289 6.1 ATF1 ARNT SIN3A FEZF1 YY1 E2F8 ZNF143 ZFP91 ATF7 RUNX3 GSTO2 CFAP58 CFAP58-DT ITPRIP GSTO1 GC10P104302 ENSG00000270075
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CFAP58-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CFAP58-DT Gene

Genomic Locations for CFAP58-DT Gene
chr10:104,351,301-104,353,575
(GRCh38/hg38)
Size:
2,275 bases
Orientation:
Minus strand
chr10:106,111,349-106,113,333
(GRCh37/hg19)

Genomic View for CFAP58-DT Gene

Genes around CFAP58-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFAP58-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFAP58-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP58-DT Gene

Proteins for CFAP58-DT Gene

Post-translational modifications for CFAP58-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFAP58-DT Gene

Domains & Families for CFAP58-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFAP58-DT Gene

Function for CFAP58-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFAP58-DT Gene

Localization for CFAP58-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CFAP58-DT Gene

Pathways & Interactions for CFAP58-DT Gene

SuperPathways for CFAP58-DT Gene

No Data Available

Interacting Proteins for CFAP58-DT Gene

Gene Ontology (GO) - Biological Process for CFAP58-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFAP58-DT Gene

Drugs & Compounds for CFAP58-DT Gene

No Compound Related Data Available

Transcripts for CFAP58-DT Gene

mRNA/cDNA for CFAP58-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP58-DT Gene

No ASD Table

Relevant External Links for CFAP58-DT Gene

GeneLoc Exon Structure for
CFAP58-DT
ECgene alternative splicing isoforms for
CFAP58-DT

Expression for CFAP58-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFAP58-DT Gene

Orthologs for CFAP58-DT Gene

Evolution for CFAP58-DT Gene

ENSEMBL:
Gene Tree for CFAP58-DT (if available)
TreeFam:
Gene Tree for CFAP58-DT (if available)

No data available for Orthologs for CFAP58-DT Gene

Paralogs for CFAP58-DT Gene

No data available for Paralogs for CFAP58-DT Gene

Variants for CFAP58-DT Gene

Sequence variations from dbSNP and Humsavar for CFAP58-DT Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000560457 -- 104,350,986(-) C/G/T downstream_transcript_variant
rs1001615557 -- 104,352,725(-) T/A intron_variant
rs1001646823 -- 104,352,321(-) A/G intron_variant
rs1002335994 -- 104,352,346(-) A/C intron_variant
rs1002612293 -- 104,354,098(-) T/G upstream_transcript_variant

Additional Variant Information for CFAP58-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFAP58-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CFAP58-DT Gene

Disorders for CFAP58-DT Gene

Additional Disease Information for CFAP58-DT

No disorders were found for CFAP58-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFAP58-DT Gene

Publications for CFAP58-DT Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for CFAP58-DT Gene

Sources for CFAP58-DT Gene

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