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Aliases for CFAP47 Gene

Aliases for CFAP47 Gene

  • Cilia And Flagella Associated Protein 47 2 3 5
  • CXorf22 3 4
  • CXorf30 3 4
  • CXorf59 3 4
  • CHDC2 3 4
  • Calponin Homology Domain-Containing Protein 2 3
  • Cilia- And Flagella-Associated Protein 47 3
  • Calponin Homology Domain Containing 2 2
  • Chromosome X Open Reading Frame 59 2
  • Chromosome X Open Reading Frame 22 2
  • Chromosome X Open Reading Frame 30 2

External Ids for CFAP47 Gene

Previous HGNC Symbols for CFAP47 Gene

  • CXorf59
  • CXorf22
  • CXorf30
  • CHDC2

Previous GeneCards Identifiers for CFAP47 Gene

  • GC0XP036046

Summaries for CFAP47 Gene

Entrez Gene Summary for CFAP47 Gene

  • While this gene is well-supported by transcript data, no functional information on its protein product is currently available. [provided by RefSeq, Dec 2009]

GeneCards Summary for CFAP47 Gene

CFAP47 (Cilia And Flagella Associated Protein 47) is a Protein Coding gene.

Additional gene information for CFAP47 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP47 Gene

Genomics for CFAP47 Gene

GeneHancer (GH) Regulatory Elements for CFAP47 Gene

Promoters and enhancers for CFAP47 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ035919 Promoter 1.2 EPDnew Ensembl 650.7 +0.2 167 0.6 MXI1 RFX1 BMI1 CFAP47 GC0XM036021 RNU6-641P
GH0XJ035890 Promoter 1 EPDnew 650.3 -28.9 -28851 0.1 CTCF BACH1 RAD21 RFX5 ZNF316 ZNF143 SMC3 NFE2 MAFK ZNF654 CFAP47 ENSG00000271519
GH0XJ036198 Enhancer 0.4 ENCODE 0.1 +279.0 279015 0.2 SP1 NANOG HMGB1P16 GC0XM035958 CFAP47
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CFAP47 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CFAP47 Gene

Genomic Locations for CFAP47 Gene
465,586 bases
Plus strand
70,419 bases
Plus strand

Genomic View for CFAP47 Gene

Genes around CFAP47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFAP47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP47 Gene

Proteins for CFAP47 Gene

  • Protein details for CFAP47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Cilia- and flagella-associated protein 47
    Protein Accession:
    Secondary Accessions:
    • A0A140T8X2
    • A6PW82
    • B1ARL5
    • Q5JRM8
    • Q8N6X8
    • Q8N9S7

    Protein attributes for CFAP47 Gene

    3187 amino acids
    Molecular mass:
    361625 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAI01699.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI01701.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC04251.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CFAP47 Gene


neXtProt entry for CFAP47 Gene

Post-translational modifications for CFAP47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CFAP47 Gene

Domains & Families for CFAP47 Gene

Gene Families for CFAP47 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for CFAP47 Gene


Suggested Antigen Peptide Sequences for CFAP47 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CFAP47: view

No data available for UniProtKB/Swiss-Prot for CFAP47 Gene

Function for CFAP47 Gene

genes like me logo Genes that share phenotypes with CFAP47: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CFAP47

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFAP47 Gene

Localization for CFAP47 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CFAP47 gene
Compartment Confidence
mitochondrion 2
cytosol 1

Gene Ontology (GO) - Cellular Components for CFAP47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CFAP47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for CFAP47 Gene

Pathways & Interactions for CFAP47 Gene

SuperPathways for CFAP47 Gene

No Data Available

Interacting Proteins for CFAP47 Gene

Selected Interacting proteins: Q6ZTR5-CFA47_HUMAN for CFAP47 Gene via IID

Gene Ontology (GO) - Biological Process for CFAP47 Gene


No data available for Pathways by source and SIGNOR curated interactions for CFAP47 Gene

Drugs & Compounds for CFAP47 Gene

No Compound Related Data Available

Transcripts for CFAP47 Gene

mRNA/cDNA for CFAP47 Gene

(5) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CFAP47

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP47 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16
SP2: -

Relevant External Links for CFAP47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CFAP47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFAP47 Gene

Protein differential expression in normal tissues from HIPED for CFAP47 Gene

This gene is overexpressed in Amniocyte (61.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CFAP47 Gene

NURSA nuclear receptor signaling pathways regulating expression of CFAP47 Gene:

genes like me logo Genes that share expression patterns with CFAP47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFAP47 Gene

Orthologs for CFAP47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP47 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CXorf22 34
  • 97 (a)
CHDC2 33
  • 95.67 (n)
(Rattus norvegicus)
Mammalia LOC680813 33
  • 78.75 (n)
(Canis familiaris)
Mammalia CXorf22 34
  • 71 (a)
(Bos Taurus)
Mammalia CXorf22 34
  • 69 (a)
(Mus musculus)
Mammalia Gm7173 34
  • 66 (a)
(Ornithorhynchus anatinus)
Mammalia CXorf22 34
  • 52 (a)
(Monodelphis domestica)
Mammalia CXorf22 34
  • 43 (a)
(Gallus gallus)
Aves CXorf22 34
  • 43 (a)
(Anolis carolinensis)
Reptilia CXorf22 34
  • 47 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 36 (a)
Species where no ortholog for CFAP47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CFAP47 Gene

Gene Tree for CFAP47 (if available)
Gene Tree for CFAP47 (if available)
Evolutionary constrained regions (ECRs) for CFAP47: view image

Paralogs for CFAP47 Gene

No data available for Paralogs for CFAP47 Gene

Variants for CFAP47 Gene

Sequence variations from dbSNP and Humsavar for CFAP47 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs782477064 uncertain-significance, Abnormality of neuronal migration 36,310,956(+) A/G coding_sequence_variant, genic_downstream_transcript_variant, missense_variant
rs1000002870 -- 36,222,471(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000008288 -- 36,169,456(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000009577 -- 35,973,703(+) A/C/G intron_variant
rs1000030327 -- 35,940,221(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CFAP47 Gene

Variant ID Type Subtype PubMed ID
esv1035775 CNV insertion 17803354
esv2740088 CNV deletion 23290073
esv3304487 CNV mobile element insertion 20981092
esv3432080 CNV insertion 20981092
nsv1077581 CNV duplication 25765185
nsv470349 CNV gain 18288195
nsv470349 CNV gain 18288195
nsv470349 CNV gain 18288195
nsv516150 CNV gain 19592680
nsv516150 CNV gain 19592680

Additional Variant Information for CFAP47 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CFAP47 Gene

Disorders for CFAP47 Gene

Additional Disease Information for CFAP47

No disorders were found for CFAP47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFAP47 Gene

Publications for CFAP47 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. CHK2-BRCA1 tumor-suppressor axis restrains oncogenic Aurora-A kinase to ensure proper mitotic microtubule assembly. (PMID: 26831064) Ertych N … Bastians H (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 58

Products for CFAP47 Gene

Sources for CFAP47 Gene

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