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Aliases for CETN4P Gene

Aliases for CETN4P Gene

  • Centrin 4, Pseudogene 2 3 5
  • Centrin EF-Hand Protein 4, Pseudogene 2 3
  • CETN4 Pseudogene 3

External Ids for CETN4P Gene

Previous GeneCards Identifiers for CETN4P Gene

  • GC04M123653
  • GC04M119378

Summaries for CETN4P Gene

Entrez Gene Summary for CETN4P Gene

  • Centrins are members of the calcium-binding EF-hand protein superfamily and accumulate in centrosomes. This gene has been inactivated by mutation and is nonfunctional in humans. [provided by RefSeq, Oct 2008]

GeneCards Summary for CETN4P Gene

CETN4P (Centrin 4, Pseudogene) is a Pseudogene. Diseases associated with CETN4P include Bardet-Biedl Syndrome.

Additional gene information for CETN4P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CETN4P Gene

Genomics for CETN4P Gene

GeneHancer (GH) Regulatory Elements for CETN4P Gene

Promoters and enhancers for CETN4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J122731 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 666 -0.7 -721 2.9 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 POLR2B ZNF143 FOS CETN4P BBS12 EXOSC9 SPATA5 KIAA1109 BBS7 ENSG00000273007 TRPC3 LOC727709
GH04J122763 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 20.7 -32.3 -32323 4 PKNOX1 FOXA2 ARNT DMAP1 IRF4 GTF3C2 TCF12 FOS ATF7 RUNX3 SPATA5 CETN4P FGF2 ENSG00000237868 BBS12 EXOSC9 NUDT6 CCNA2 LOC727709 RPL34P12
GH04J122825 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.2 -95.0 -95021 3.8 SIN3A ZNF2 YY1 GLIS2 ZNF213 ATF7 RUNX3 SP3 YY2 JUNB FGF2 GC04P122829 CETN4P RPS26P23
GH04J122757 Enhancer 1.1 Ensembl ENCODE dbSUPER 18 -25.7 -25703 0.9 CTCF ATF1 JUN BACH1 E4F1 RAD21 RFX5 CHAMP1 CC2D1A BRD9 CETN4P BBS12 NUDT6 SPATA5 FGF2 LOC727709 RPL34P12
GH04J122795 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 9.1 -65.7 -65670 4.5 HDAC1 PKNOX1 TAF9B ZBTB40 ZNF766 ZNF366 ATF7 RXRA CEBPB USF2 FGF2 SPATA5 NUDT6 IL21-AS1 CETN4P SPRY1 RPL34P12 LOC727709
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CETN4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CETN4P Gene

Genomic Locations for CETN4P Gene
chr4:122,728,532-122,732,482
(GRCh38/hg38)
Size:
3,951 bases
Orientation:
Minus strand
chr4:123,651,344-123,653,613
(GRCh37/hg19)
Size:
2,270 bases
Orientation:
Minus strand

Genomic View for CETN4P Gene

Genes around CETN4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CETN4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CETN4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CETN4P Gene

Function for CETN4P Gene

Phenotypes From GWAS Catalog for CETN4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CETN4P Gene

Localization for CETN4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CETN4P Gene

Pathways & Interactions for CETN4P Gene

SuperPathways for CETN4P Gene

No Data Available

Interacting Proteins for CETN4P Gene

Gene Ontology (GO) - Biological Process for CETN4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CETN4P Gene

Drugs & Compounds for CETN4P Gene

No Compound Related Data Available

Transcripts for CETN4P Gene

mRNA/cDNA for CETN4P Gene

(1) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CETN4P Gene

Centrin EF-hand protein 4, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CETN4P Gene

No ASD Table

Relevant External Links for CETN4P Gene

GeneLoc Exon Structure for
CETN4P
ECgene alternative splicing isoforms for
CETN4P

Expression for CETN4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CETN4P Gene

mRNA differential expression in normal tissues according to GTEx for CETN4P Gene

This gene is overexpressed in Testis (x13.0).

NURSA nuclear receptor signaling pathways regulating expression of CETN4P Gene:

CETN4P

SOURCE GeneReport for Unigene cluster for CETN4P Gene:

Hs.647968
genes like me logo Genes that share expression patterns with CETN4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CETN4P Gene

Orthologs for CETN4P Gene

Evolution for CETN4P Gene

ENSEMBL:
Gene Tree for CETN4P (if available)
TreeFam:
Gene Tree for CETN4P (if available)

No data available for Orthologs for CETN4P Gene

Paralogs for CETN4P Gene

No data available for Paralogs for CETN4P Gene

Variants for CETN4P Gene

Sequence variations from dbSNP and Humsavar for CETN4P Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs28642232 likely-benign, Bardet-Biedl syndrome 122,732,692(-) C/T upstream_transcript_variant
rs309358 likely-benign, Bardet-Biedl syndrome 122,732,771(-) G/A upstream_transcript_variant
rs59440868 uncertain-significance, Bardet-Biedl syndrome 122,732,834(-) G/A/C/T upstream_transcript_variant
rs886059056 uncertain-significance, Bardet-Biedl syndrome 122,732,743(-) C/G upstream_transcript_variant
rs893496118 uncertain-significance, Bardet-Biedl syndrome 122,732,738(-) C/T upstream_transcript_variant

Additional Variant Information for CETN4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CETN4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CETN4P Gene

Disorders for CETN4P Gene

MalaCards: The human disease database

(1) MalaCards diseases for CETN4P Gene - From: GeneCards

Disorder Aliases PubMed IDs
bardet-biedl syndrome
  • biedl-bardet syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CETN4P

genes like me logo Genes that share disorders with CETN4P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CETN4P Gene

Publications for CETN4P Gene

  1. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 58
  2. Comparative genomics search for losses of long-established genes on the human lineage. (PMID: 18085818) Zhu J … Haussler D (PLoS computational biology 2007) 3 58
  3. Centrin isoforms in mammals. Relation to calmodulin. (PMID: 17089211) Friedberg F (Molecular biology reports 2006) 3 58

Products for CETN4P Gene

Sources for CETN4P Gene

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