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Aliases for CERS6-AS1 Gene

Subcategory (RNA class) for CERS6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CERS6-AS1 Gene

  • CERS6 Antisense RNA 1 2 3 5

External Ids for CERS6-AS1 Gene

Previous GeneCards Identifiers for CERS6-AS1 Gene

  • GC02M169630

Summaries for CERS6-AS1 Gene

GeneCards Summary for CERS6-AS1 Gene

CERS6-AS1 (CERS6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CERS6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CERS6-AS1 Gene

Genomics for CERS6-AS1 Gene

GeneHancer (GH) Regulatory Elements for CERS6-AS1 Gene

Promoters and enhancers for CERS6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I168786 Promoter 0.6 EPDnew 550.8 +0.4 433 0.1 ZBTB33 NOSTRIN CERS6-AS1 RNU6-766P GC02M168607
GH02I168764 Enhancer 0.5 ENCODE 11.6 +21.0 21028 2 POLR2A HLF FOS HOMEZ G6PC2 NOSTRIN CERS6-AS1 GC02M168607 RNU6-766P CERS6
GH02I168820 Enhancer 0.2 FANTOM5 10.6 -33.8 -33760 0 NOSTRIN CERS6-AS1 GC02M168846
GH02I168801 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -16.2 -16159 3.6 PKNOX1 ATF1 ARNT SIN3A TCF12 POLR2B ZNF766 ATF7 RXRA ZNF592 NOSTRIN CERS6-AS1 GC02M168846
GH02I168796 Enhancer 1.2 Ensembl ENCODE 0.4 -10.9 -10934 3.6 PKNOX1 SMAD1 ATF1 FOXA2 ARNT TCF12 ZNF766 GATA2 ATF7 RXRA PPIG PHOSPHO2 NOSTRIN G6PC2 CERS6-AS1 GC02M168846
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CERS6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CERS6-AS1 Gene

Genomic Locations for CERS6-AS1 Gene
chr2:168,771,951-168,786,961
(GRCh38/hg38)
Size:
15,011 bases
Orientation:
Minus strand
chr2:169,628,463-169,643,471
(GRCh37/hg19)

Genomic View for CERS6-AS1 Gene

Genes around CERS6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CERS6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CERS6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CERS6-AS1 Gene

Proteins for CERS6-AS1 Gene

Post-translational modifications for CERS6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CERS6-AS1 Gene

Domains & Families for CERS6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CERS6-AS1 Gene

Function for CERS6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CERS6-AS1 Gene

Localization for CERS6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CERS6-AS1 Gene

Pathways & Interactions for CERS6-AS1 Gene

SuperPathways for CERS6-AS1 Gene

No Data Available

Interacting Proteins for CERS6-AS1 Gene

Gene Ontology (GO) - Biological Process for CERS6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CERS6-AS1 Gene

Drugs & Compounds for CERS6-AS1 Gene

No Compound Related Data Available

Transcripts for CERS6-AS1 Gene

mRNA/cDNA for CERS6-AS1 Gene

(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CERS6-AS1 Gene

No ASD Table

Relevant External Links for CERS6-AS1 Gene

GeneLoc Exon Structure for
CERS6-AS1
ECgene alternative splicing isoforms for
CERS6-AS1

Expression for CERS6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CERS6-AS1 Gene

genes like me logo Genes that share expression patterns with CERS6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CERS6-AS1 Gene

Orthologs for CERS6-AS1 Gene

Evolution for CERS6-AS1 Gene

ENSEMBL:
Gene Tree for CERS6-AS1 (if available)
TreeFam:
Gene Tree for CERS6-AS1 (if available)

No data available for Orthologs for CERS6-AS1 Gene

Paralogs for CERS6-AS1 Gene

No data available for Paralogs for CERS6-AS1 Gene

Variants for CERS6-AS1 Gene

Sequence variations from dbSNP and Humsavar for CERS6-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000135498 -- 168,778,877(-) G/A intron_variant
rs1000175749 -- 168,775,756(-) C/G intron_variant
rs1000417381 -- 168,775,509(-) C/T intron_variant
rs1000805612 -- 168,781,564(-) T/G intron_variant
rs1000870722 -- 168,786,340(-) C/T intron_variant

Additional Variant Information for CERS6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CERS6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CERS6-AS1 Gene

Disorders for CERS6-AS1 Gene

Additional Disease Information for CERS6-AS1

No disorders were found for CERS6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CERS6-AS1 Gene

Publications for CERS6-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for CERS6-AS1 Gene

Sources for CERS6-AS1 Gene

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