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Aliases for CERNA3 Gene

Subcategory (RNA class) for CERNA3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CERNA3 Gene

  • Competing Endogenous LncRNA 3 For MiR-645 2 3 5
  • CTA 3

External Ids for CERNA3 Gene

Summaries for CERNA3 Gene

GeneCards Summary for CERNA3 Gene

CERNA3 (Competing Endogenous LncRNA 3 For MiR-645) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CERNA3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CERNA3 Gene

Genomics for CERNA3 Gene

GeneHancer (GH) Regulatory Elements for CERNA3 Gene

Promoters and enhancers for CERNA3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I056072 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.5 -472 2.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC RPS20 CERNA3 PIR49149 SNORD54 GC08M056077 GC08M056076 GC08M056075 TGS1 RNA5SP265 PSMC6P1
GH08I056093 Enhancer 0.7 ENCODE 0.4 +19.2 19235 0.2 CTCF RB1 ZNF2 RAD21 CC2D1A CTBP1 FOXK2 ZNF143 SMC3 SMARCA5 MOS NPM1P21 CERNA3 GC08P056003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CERNA3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CERNA3 Gene

Genomic Locations for CERNA3 Gene
chr8:56,074,592-56,081,915
(GRCh38/hg38)
Size:
7,324 bases
Orientation:
Plus strand
chr8:56,987,151-56,987,833
(GRCh37/hg19)

Genomic View for CERNA3 Gene

Genes around CERNA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CERNA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CERNA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CERNA3 Gene

Proteins for CERNA3 Gene

Post-translational modifications for CERNA3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CERNA3 Gene

Domains & Families for CERNA3 Gene

Gene Families for CERNA3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CERNA3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CERNA3 Gene

Function for CERNA3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CERNA3 Gene

Localization for CERNA3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CERNA3 Gene

Pathways & Interactions for CERNA3 Gene

SuperPathways for CERNA3 Gene

No Data Available

Interacting Proteins for CERNA3 Gene

Gene Ontology (GO) - Biological Process for CERNA3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CERNA3 Gene

Drugs & Compounds for CERNA3 Gene

No Compound Related Data Available

Transcripts for CERNA3 Gene

mRNA/cDNA for CERNA3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CERNA3 Gene

No ASD Table

Relevant External Links for CERNA3 Gene

GeneLoc Exon Structure for
CERNA3
ECgene alternative splicing isoforms for
CERNA3

Expression for CERNA3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CERNA3 Gene

Orthologs for CERNA3 Gene

Evolution for CERNA3 Gene

ENSEMBL:
Gene Tree for CERNA3 (if available)
TreeFam:
Gene Tree for CERNA3 (if available)

No data available for Orthologs for CERNA3 Gene

Paralogs for CERNA3 Gene

No data available for Paralogs for CERNA3 Gene

Variants for CERNA3 Gene

Sequence variations from dbSNP and Humsavar for CERNA3 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs863223400 uncertain-significance, not provided 56,073,725(+) TTT/TTTT upstream_transcript_variant
rs1000156755 -- 56,077,225(+) C/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000287653 -- 56,073,500(+) A/C upstream_transcript_variant
rs1000882533 -- 56,074,469(+) A/T upstream_transcript_variant
rs1001594282 -- 56,080,599(+) A/G genic_downstream_transcript_variant, intron_variant

Additional Variant Information for CERNA3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CERNA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CERNA3 Gene

Disorders for CERNA3 Gene

No disorders were found for CERNA3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CERNA3 Gene

Publications for CERNA3 Gene

  1. Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy. (PMID: 28415557) Wang Z … Wu S (Oncotarget 2017) 2 3 58

Products for CERNA3 Gene

Sources for CERNA3 Gene

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