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Aliases for CEP89 Gene

Aliases for CEP89 Gene

  • Centrosomal Protein 89 2 3 5
  • Coiled-Coil Domain Containing 123 2 3
  • Centrosomal Protein 89kDa 2 3
  • Centrosomal Protein 123 3 4
  • CCDC123 3 4
  • CEP123 3 4
  • Coiled-Coil Domain-Containing Protein 123, Mitochondrial 3
  • Coiled-Coil Domain-Containing Protein 123 4
  • Centrosomal Protein Of 89 KDa 3
  • Cep89 4

External Ids for CEP89 Gene

Previous HGNC Symbols for CEP89 Gene

  • CCDC123

Previous GeneCards Identifiers for CEP89 Gene

  • GC19M033370

Summaries for CEP89 Gene

GeneCards Summary for CEP89 Gene

CEP89 (Centrosomal Protein 89) is a Protein Coding gene. Diseases associated with CEP89 include Cystinuria. Among its related pathways are Organelle biogenesis and maintenance and Regulation of PLK1 Activity at G2/M Transition.

UniProtKB/Swiss-Prot for CEP89 Gene

  • Required for ciliogenesis. Also plays a role in mitochondrial metabolism where it may modulate complex IV activity.

Additional gene information for CEP89 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEP89 Gene

Genomics for CEP89 Gene

GeneHancer (GH) Regulatory Elements for CEP89 Gene

Promoters and enhancers for CEP89 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I032970 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.1 128 1.9 PKNOX1 ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 FAAP24 CEP89 ZNF507 GPATCH1 PDCD5 GC19M032886 GC19P032951
GH19I033370 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 130.2 -402.7 -402670 8.7 FEZF1 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC ZFP41 SSRP1 ZNF610 CEBPG GPATCH1 LSM14A CEP89 KIAA0355 FAAP24 PDCD5 ENSG00000267219 WDR88 ANKRD27
GH19I033273 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 134.1 -303.0 -303024 3.3 CLOCK FOXA2 MLX ARID4B DMAP1 ZNF2 YY1 ZNF302 ZNF416 ZNF548 GPATCH1 ZNF507 CEP89 LSM14A KIAA0355 PDCD5 CEBPG WDR88 FAAP24 DPY19L3
GH19I033296 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 90.2 -329.4 -329377 10.6 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF416 ZNF143 CEBPA-AS1 CEBPA ENSG00000267580 ENSG00000267727 GC19M033302 GPATCH1 ZNF507 CEP89 LSM14A KIAA0355
GH19I033795 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 94.4 -825.3 -825250 5.6 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 POLR2B ZNF213 ZNF143 KCTD15 GPATCH1 CEP89 ZNF599 LSM14A KIAA0355 ZNF302 ZNF181 WDR88 FAAP24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CEP89 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CEP89 Gene

Genomic Locations for CEP89 Gene
96,105 bases
Minus strand

Genomic View for CEP89 Gene

Genes around CEP89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEP89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEP89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEP89 Gene

Proteins for CEP89 Gene

  • Protein details for CEP89 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Centrosomal protein of 89 kDa
    Protein Accession:
    Secondary Accessions:
    • B9EGA6
    • Q8N5J8

    Protein attributes for CEP89 Gene

    783 amino acids
    Molecular mass:
    89590 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CEP89 Gene


neXtProt entry for CEP89 Gene

Post-translational modifications for CEP89 Gene

  • Ubiquitination at Lys682 and Lys700

No data available for DME Specific Peptides for CEP89 Gene

Domains & Families for CEP89 Gene

Gene Families for CEP89 Gene

Human Protein Atlas (HPA):
  • Cancer-related genes
  • Disease related genes
  • Predicted intracellular proteins
  • Predicted secreted proteins

Protein Domains for CEP89 Gene


Suggested Antigen Peptide Sequences for CEP89 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CEP89: view

No data available for UniProtKB/Swiss-Prot for CEP89 Gene

Function for CEP89 Gene

Molecular function for CEP89 Gene

UniProtKB/Swiss-Prot Function:
Required for ciliogenesis. Also plays a role in mitochondrial metabolism where it may modulate complex IV activity.

Phenotypes From GWAS Catalog for CEP89 Gene

Gene Ontology (GO) - Molecular Function for CEP89 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23789104
genes like me logo Genes that share ontologies with CEP89: view
genes like me logo Genes that share phenotypes with CEP89: view

Animal Model Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CEP89 Gene

Localization for CEP89 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CEP89 Gene

Cytoplasm, cytosol. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Cytoplasm, cytoskeleton, spindle pole. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole. Mitochondrion intermembrane space. Note=Localizes to the distal appendage region of the centriole, which anchors the mother centriole to the plasma membrane.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CEP89 gene
Compartment Confidence
plasma membrane 5
cytoskeleton 5
mitochondrion 5
cytosol 5
nucleus 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CEP89 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000922 spindle pole IDA 21399614
GO:0005737 cytoplasm IEA --
GO:0005739 mitochondrion IEA --
GO:0005758 mitochondrial intermembrane space IEA --
GO:0005813 centrosome IDA 21399614
genes like me logo Genes that share ontologies with CEP89: view

Pathways & Interactions for CEP89 Gene

genes like me logo Genes that share pathways with CEP89: view

Pathways by source for CEP89 Gene

Gene Ontology (GO) - Biological Process for CEP89 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007005 mitochondrion organization IEA --
GO:0007268 chemical synaptic transmission IEA --
GO:0030030 cell projection organization IEA --
GO:0060271 cilium assembly IEA,IMP 23348840
GO:0097711 ciliary basal body-plasma membrane docking TAS --
genes like me logo Genes that share ontologies with CEP89: view

No data available for SIGNOR curated interactions for CEP89 Gene

Drugs & Compounds for CEP89 Gene

No Compound Related Data Available

Transcripts for CEP89 Gene

Unigene Clusters for CEP89 Gene

Centrosomal protein 89kDa:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for CEP89 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20
SP1: -
SP2: - -
SP3: - - -

Relevant External Links for CEP89 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CEP89 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CEP89 Gene

Protein differential expression in normal tissues from HIPED for CEP89 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (48.9) and Amniocyte (15.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CEP89 Gene

Protein tissue co-expression partners for CEP89 Gene

NURSA nuclear receptor signaling pathways regulating expression of CEP89 Gene:


SOURCE GeneReport for Unigene cluster for CEP89 Gene:


Evidence on tissue expression from TISSUES for CEP89 Gene

  • Nervous system(4.2)
  • Intestine(4.1)
genes like me logo Genes that share expression patterns with CEP89: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEP89 Gene

Orthologs for CEP89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CEP89 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CEP89 33 34
  • 98.33 (n)
(Canis familiaris)
Mammalia CEP89 33 34
  • 83.33 (n)
(Bos Taurus)
Mammalia CEP89 33 34
  • 81.79 (n)
(Rattus norvegicus)
Mammalia Cep89 33
  • 77.99 (n)
(Mus musculus)
Mammalia Cep89 33 16 34
  • 75.87 (n)
(Ornithorhynchus anatinus)
Mammalia CEP89 34
  • 61 (a)
(Monodelphis domestica)
Mammalia CEP89 34
  • 53 (a)
(Gallus gallus)
Aves CEP89 33 34
  • 63.75 (n)
(Anolis carolinensis)
Reptilia CEP89 34
  • 54 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia cep89 33
  • 58.21 (n)
(Danio rerio)
Actinopterygii cep89 33 34
  • 54.35 (n)
zgc63648 33
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 30 (a)
Species where no ortholog for CEP89 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CEP89 Gene

Gene Tree for CEP89 (if available)
Gene Tree for CEP89 (if available)

Paralogs for CEP89 Gene

(1) SIMAP similar genes for CEP89 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CEP89: view

No data available for Paralogs for CEP89 Gene

Variants for CEP89 Gene

Sequence variations from dbSNP and Humsavar for CEP89 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000015369 -- 32,960,763(-) T/C genic_upstream_transcript_variant, intron_variant
rs1000044292 -- 32,916,989(-) C/A intron_variant
rs1000127090 -- 32,967,711(-) C/G genic_upstream_transcript_variant, intron_variant
rs1000142132 -- 32,907,396(-) C/G intron_variant
rs1000146298 -- 32,923,740(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CEP89 Gene

Variant ID Type Subtype PubMed ID
nsv960824 CNV duplication 23825009
nsv833807 CNV loss 17160897
nsv516922 CNV loss 19592680
nsv510473 OTHER sequence alteration 20534489
nsv1062926 CNV loss 25217958
nsv1060014 CNV gain 25217958
esv3893199 CNV gain 25118596
esv3644180 OTHER inversion 21293372
esv26692 CNV loss 19812545
esv24841 CNV loss 19812545

Variation tolerance for CEP89 Gene

Residual Variation Intolerance Score: 97% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 13.18; 95.19% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CEP89 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CEP89 Gene

Disorders for CEP89 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CEP89 Gene - From: HGMD and GeneCards

Disorder Aliases PubMed IDs
  • csnu
- elite association - COSMIC cancer census association via MalaCards
Search CEP89 in MalaCards View complete list of genes associated with diseases


  • Note=Homozygous deletion comprising CEP89 and SLC7A9 genes has been reported in a patient with isolated complex IV deficiency, intellectual disability and multisystemic problems that include cystinuria, cataract, broad based walking pattern and deafness. {ECO:0000269 PubMed:23575228}.

Additional Disease Information for CEP89

genes like me logo Genes that share disorders with CEP89: view

No data available for Genatlas for CEP89 Gene

Publications for CEP89 Gene

  1. Centriole distal appendages promote membrane docking, leading to cilia initiation. (PMID: 23348840) Tanos BE … Tsou MF (Genes & development 2013) 3 4 58
  2. CEP89 is required for mitochondrial metabolism and neuronal function in man and fly. (PMID: 23575228) van Bon BW … Schenck A (Human molecular genetics 2013) 3 4 58
  3. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. (PMID: 21399614) Jakobsen L … Andersen JS (The EMBO journal 2011) 3 4 58
  4. Human-specific nonsense mutations identified by genome sequence comparisons. (PMID: 16395595) Hahn Y … Lee B (Human genetics 2006) 2 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58

Products for CEP89 Gene

  • Addgene plasmids for CEP89

Sources for CEP89 Gene

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