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Aliases for CEP83-AS1 Gene

Subcategory (RNA class) for CEP83-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CEP83-AS1 Gene

  • CEP83 Antisense RNA 1 (Head To Head) 2 3 5
  • CCDC41 Antisense RNA 1 (Head To Head) 2 3
  • CCDC41-AS1 3

External Ids for CEP83-AS1 Gene

ORGUL Members for CEP83-AS1 Gene

Previous HGNC Symbols for CEP83-AS1 Gene

  • CCDC41-AS1

Previous GeneCards Identifiers for CEP83-AS1 Gene

  • GC12P094854

Summaries for CEP83-AS1 Gene

GeneCards Summary for CEP83-AS1 Gene

CEP83-AS1 (CEP83 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CEP83-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEP83-AS1 Gene

Genomics for CEP83-AS1 Gene

GeneHancer (GH) Regulatory Elements for CEP83-AS1 Gene

Promoters and enhancers for CEP83-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I094458 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 0.0 -39 2.6 HDGF PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CEP83 CEP83-AS1 ENSG00000258172 ENSG00000258365 RBMS2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CEP83-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CEP83-AS1 Gene

Genomic Locations for CEP83-AS1 Gene
chr12:94,460,003-94,462,570
(GRCh38/hg38)
Size:
2,568 bases
Orientation:
Plus strand
chr12:94,853,779-94,856,346
(GRCh37/hg19)

Genomic View for CEP83-AS1 Gene

Genes around CEP83-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEP83-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEP83-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEP83-AS1 Gene

Proteins for CEP83-AS1 Gene

Post-translational modifications for CEP83-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEP83-AS1 Gene

Domains & Families for CEP83-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEP83-AS1 Gene

Function for CEP83-AS1 Gene

Phenotypes From GWAS Catalog for CEP83-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEP83-AS1 Gene

Localization for CEP83-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CEP83-AS1 Gene

Pathways & Interactions for CEP83-AS1 Gene

SuperPathways for CEP83-AS1 Gene

No Data Available

Interacting Proteins for CEP83-AS1 Gene

Gene Ontology (GO) - Biological Process for CEP83-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEP83-AS1 Gene

Drugs & Compounds for CEP83-AS1 Gene

No Compound Related Data Available

Transcripts for CEP83-AS1 Gene

mRNA/cDNA for CEP83-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CEP83-AS1 Gene

No ASD Table

Relevant External Links for CEP83-AS1 Gene

GeneLoc Exon Structure for
CEP83-AS1
ECgene alternative splicing isoforms for
CEP83-AS1

Expression for CEP83-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEP83-AS1 Gene

Orthologs for CEP83-AS1 Gene

Evolution for CEP83-AS1 Gene

ENSEMBL:
Gene Tree for CEP83-AS1 (if available)
TreeFam:
Gene Tree for CEP83-AS1 (if available)

No data available for Orthologs for CEP83-AS1 Gene

Paralogs for CEP83-AS1 Gene

No data available for Paralogs for CEP83-AS1 Gene

Variants for CEP83-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEP83-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000012651 -- 94,458,343(+) C/T upstream_transcript_variant
rs1000228195 -- 94,461,984(+) T/C non_coding_transcript_variant
rs1000583621 -- 94,462,474(+) A/G non_coding_transcript_variant
rs1001742482 -- 94,458,736(+) ATAAATAAATAAATAAA/ATAAATAAATAAA upstream_transcript_variant
rs1002307436 -- 94,460,264(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CEP83-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv516550 CNV loss 19592680
nsv7234 OTHER inversion 18451855
nsv832490 CNV gain 17160897

Additional Variant Information for CEP83-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEP83-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEP83-AS1 Gene

Disorders for CEP83-AS1 Gene

Additional Disease Information for CEP83-AS1

No disorders were found for CEP83-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEP83-AS1 Gene

Publications for CEP83-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CEP83-AS1 Gene

Sources for CEP83-AS1 Gene

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