Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CENPVL1 Gene

Aliases for CENPVL1 Gene

  • Centromere Protein V Like 1 2 3 3 5
  • Proline Rich 6-Like 1 2 3
  • Centromere Protein V Pseudogene 1 2
  • Centromere Protein V-Like 2 12
  • CENPVP1 3
  • PRR6L1 3

External Ids for CENPVL1 Gene

Previous HGNC Symbols for CENPVL1 Gene

  • CENPVP1

Previous GeneCards Identifiers for CENPVL1 Gene

  • GC0XP051473

Summaries for CENPVL1 Gene

GeneCards Summary for CENPVL1 Gene

CENPVL1 (Centromere Protein V Like 1) is a Protein Coding gene. An important paralog of this gene is CENPVL2.

Additional gene information for CENPVL1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPVL1 Gene

Genomics for CENPVL1 Gene

GeneHancer (GH) Regulatory Elements for CENPVL1 Gene

Promoters and enhancers for CENPVL1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ051891 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 6.4 +183.1 183068 4.4 HDGF ARID4B SIN3A DMAP1 KLF14 YY1 GLIS2 SCRT2 RCOR1 RUNX3 MAGED1 RNU6-504P CENPVL1 ENSG00000228827
GH0XJ051802 Promoter/Enhancer 1.3 Ensembl ENCODE 7.6 +92.9 92920 1.9 ATF1 MZF1 SIN3A ZBTB40 YY1 ETS1 ZNF335 GLIS2 ELK1 ZNF143 MAGED1 RNU6-504P CENPVL1 NUDT11 LOC100631242
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CENPVL1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CENPVL1 Gene

Genomic Locations for CENPVL1 Gene
chrX:51,710,512-51,712,131
(GRCh38/hg38)
Size:
1,620 bases
Orientation:
Plus strand
chrX:51,453,887-51,455,227
(GRCh37/hg19)

Genomic View for CENPVL1 Gene

Genes around CENPVL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CENPVL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CENPVL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPVL1 Gene

Proteins for CENPVL1 Gene

  • Protein details for CENPVL1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RR11-A0A0U1RR11_HUMAN
    Recommended name:
    Centromere protein V-like 1
    Protein Accession:
    A0A0U1RR11

    Protein attributes for CENPVL1 Gene

    Size:
    272 amino acids
    Molecular mass:
    29887 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CENPVL1 Gene

Post-translational modifications for CENPVL1 Gene

No Post-translational modifications

Other Protein References for CENPVL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CENPVL1 Gene

Domains & Families for CENPVL1 Gene

Gene Families for CENPVL1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CENPVL1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CENPVL1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CENPVL1 Gene

Function for CENPVL1 Gene

Gene Ontology (GO) - Molecular Function for CENPVL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016846 carbon-sulfur lyase activity IEA --
genes like me logo Genes that share ontologies with CENPVL1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CENPVL1 Gene

Localization for CENPVL1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CENPVL1 Gene

Pathways & Interactions for CENPVL1 Gene

SuperPathways for CENPVL1 Gene

No Data Available

Interacting Proteins for CENPVL1 Gene

Gene Ontology (GO) - Biological Process for CENPVL1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CENPVL1 Gene

Drugs & Compounds for CENPVL1 Gene

No Compound Related Data Available

Transcripts for CENPVL1 Gene

mRNA/cDNA for CENPVL1 Gene

(10) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CENPVL1 Gene

No ASD Table

Relevant External Links for CENPVL1 Gene

GeneLoc Exon Structure for
CENPVL1
ECgene alternative splicing isoforms for
CENPVL1

Expression for CENPVL1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CENPVL1 Gene:

CENPVL1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CENPVL1 Gene

Orthologs for CENPVL1 Gene

Evolution for CENPVL1 Gene

ENSEMBL:
Gene Tree for CENPVL1 (if available)
TreeFam:
Gene Tree for CENPVL1 (if available)

No data available for Orthologs for CENPVL1 Gene

Paralogs for CENPVL1 Gene

Paralogs for CENPVL1 Gene

genes like me logo Genes that share paralogs with CENPVL1: view

Variants for CENPVL1 Gene

Sequence variations from dbSNP and Humsavar for CENPVL1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs3098493 -- 51,710,603(+) C/T upstream_transcript_variant
rs3098494 -- 51,710,790(+) T/G upstream_transcript_variant
rs5951122 -- 51,710,305(+) T/C upstream_transcript_variant
rs781985707 -- 51,710,735(+) T/C upstream_transcript_variant
rs782281784 -- 51,710,007(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CENPVL1 Gene

Variant ID Type Subtype PubMed ID
esv1003997 OTHER inversion 20482838
esv3350872 OTHER inversion 20981092
nsv1147181 CNV duplication 26484159
nsv499710 OTHER inversion 21111241
nsv7444 OTHER inversion 18451855

Additional Variant Information for CENPVL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CENPVL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CENPVL1 Gene

Disorders for CENPVL1 Gene

No disorders were found for CENPVL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CENPVL1 Gene

Publications for CENPVL1 Gene

  1. Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. (PMID: 27250503) Wright JC … Harrow J (Nature communications 2016) 2 3 58

Products for CENPVL1 Gene

Sources for CENPVL1 Gene

Content
Loading form....