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Aliases for CENPS-CORT Gene

Aliases for CENPS-CORT Gene

  • CENPS-CORT Readthrough 2 3 5
  • APITD1-CORT Readthrough 2 3
  • APITD1-CORT Protein 3
  • APITD1-CORT 3

External Ids for CENPS-CORT Gene

Previous HGNC Symbols for CENPS-CORT Gene

  • APITD1-CORT

Summaries for CENPS-CORT Gene

Entrez Gene Summary for CENPS-CORT Gene

  • This locus represents naturally occurring read-through transcription between the neighboring APITD1 (apoptosis-inducing, TAF9-like domain 1) and CORT (cortistatin) genes. Alternative splicing results in multiple transcript variants, two of which encode fusion proteins that share sequence identity with the products of each individual gene. [provided by RefSeq, Aug 2011]

GeneCards Summary for CENPS-CORT Gene

CENPS-CORT (CENPS-CORT Readthrough) is a Protein Coding gene. Among its related pathways are Fanconi anemia pathway. An important paralog of this gene is CENPS.

Additional gene information for CENPS-CORT Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPS-CORT Gene

Genomics for CENPS-CORT Gene

GeneHancer (GH) Regulatory Elements for CENPS-CORT Gene

Promoters and enhancers for CENPS-CORT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I010429 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.5 517 2.1 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 SLC30A9 POLR2B ENSG00000271989 CENPS CENPS-CORT TARDBP PGD ENSG00000226849 DFFA UBIAD1 EXOSC10 SRM
GH01I010427 Enhancer 1 Ensembl ENCODE 550.8 -1.8 -1823 0.6 ARNT ARID4B SIN3A BMI1 ZNF2 RAD21 ZNF121 ARID2 ZNF143 RCOR1 CENPS CENPS-CORT PGD
GH01I010494 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +66.8 66845 4.7 HDGF ELF3 PKNOX1 RB1 ARID4B BMI1 ZNF2 RAD21 RFX5 ZNF335 PEX14 DFFA CENPS-CORT CENPS CORT ENSG00000203469 ENSG00000271989 PGD GC01P010513
GH01I010449 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 12.3 +21.0 20976 2.2 ZNF362 ZNF600 CORT PGD ENSG00000271989 CENPS CENPS-CORT PEX14 DFFA C1orf127 ENSG00000203469
GH01I010331 Enhancer 0.2 dbSUPER 10.5 -98.4 -98438 1.2 PGD RNU6-37P CENPS CENPS-CORT NMNAT1 LZIC ENSG00000228150 RN7SKP269 KIF1B RN7SL731P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CENPS-CORT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CENPS-CORT Gene

Genomic Locations for CENPS-CORT Gene
chr1:10,430,102-10,452,153
(GRCh38/hg38)
Size:
22,052 bases
Orientation:
Plus strand
chr1:10,490,159-10,512,210
(GRCh37/hg19)

Genomic View for CENPS-CORT Gene

Genes around CENPS-CORT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CENPS-CORT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CENPS-CORT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPS-CORT Gene

Proteins for CENPS-CORT Gene

  • Protein details for CENPS-CORT Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WT10
    Recommended name:
    CENPS-CORT readthrough
    Protein Accession:
    A0A087WT10

    Protein attributes for CENPS-CORT Gene

    Size:
    143 amino acids
    Molecular mass:
    16498 Da
    Quaternary structure:
    No Data Available
  • Protein details for CENPS-CORT Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RQL5
    Recommended name:
    CENPS-CORT readthrough
    Protein Accession:
    A0A0U1RQL5

    Protein attributes for CENPS-CORT Gene

    Size:
    49 amino acids
    Molecular mass:
    5699 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CENPS-CORT Gene

Post-translational modifications for CENPS-CORT Gene

No Post-translational modifications

Other Protein References for CENPS-CORT Gene

No data available for DME Specific Peptides for CENPS-CORT Gene

Domains & Families for CENPS-CORT Gene

Gene Families for CENPS-CORT Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CENPS-CORT Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CENPS-CORT: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CENPS-CORT Gene

Function for CENPS-CORT Gene

Phenotypes From GWAS Catalog for CENPS-CORT Gene

Gene Ontology (GO) - Molecular Function for CENPS-CORT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003682 chromatin binding IBA --
GO:0003690 double-stranded DNA binding IBA --
GO:0005179 hormone activity IEA --
GO:0046982 protein heterodimerization activity IEA --
genes like me logo Genes that share ontologies with CENPS-CORT: view

Animal Model Products

CRISPR Products

miRNA for CENPS-CORT Gene

miRTarBase miRNAs that target CENPS-CORT

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CENPS-CORT Gene

Localization for CENPS-CORT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CENPS-CORT gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CENPS-CORT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0043240 Fanconi anaemia nuclear complex IBA --
GO:0071821 FANCM-MHF complex IBA --
genes like me logo Genes that share ontologies with CENPS-CORT: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for CENPS-CORT Gene

Pathways & Interactions for CENPS-CORT Gene

SuperPathways for CENPS-CORT Gene

SuperPathway Contained pathways
1 Fanconi anemia pathway
genes like me logo Genes that share pathways with CENPS-CORT: view

Pathways by source for CENPS-CORT Gene

1 KEGG pathway for CENPS-CORT Gene

Interacting Proteins for CENPS-CORT Gene

Gene Ontology (GO) - Biological Process for CENPS-CORT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006312 mitotic recombination IBA --
GO:0010469 regulation of receptor activity IEA --
GO:0031297 replication fork processing IBA --
GO:0036297 interstrand cross-link repair IBA --
genes like me logo Genes that share ontologies with CENPS-CORT: view

No data available for SIGNOR curated interactions for CENPS-CORT Gene

Drugs & Compounds for CENPS-CORT Gene

No Compound Related Data Available

Transcripts for CENPS-CORT Gene

mRNA/cDNA for CENPS-CORT Gene

(4) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CENPS-CORT Gene

No ASD Table

Relevant External Links for CENPS-CORT Gene

GeneLoc Exon Structure for
CENPS-CORT
ECgene alternative splicing isoforms for
CENPS-CORT

Expression for CENPS-CORT Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expression patterns with CENPS-CORT: view

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CENPS-CORT Gene

Orthologs for CENPS-CORT Gene

This gene was present in the common ancestor of chordates.

Orthologs for CENPS-CORT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia APITD1 34 33
  • 99.52 (n)
OneToMany
cow
(Bos Taurus)
Mammalia APITD1 33 34
  • 88.11 (n)
dog
(Canis familiaris)
Mammalia APITD1 33
  • 86.5 (n)
rat
(Rattus norvegicus)
Mammalia Apitd1 33
  • 81.94 (n)
mouse
(Mus musculus)
Mammalia Apitd1 34 33
  • 81.2 (n)
OneToMany
Cenps 16
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 53 (a)
OneToMany
chicken
(Gallus gallus)
Aves APITD1 34 33
  • 66.67 (n)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia apitd1 33
  • 66.38 (n)
zebrafish
(Danio rerio)
Actinopterygii apitd1 33 34
  • 63.31 (n)
Species where no ortholog for CENPS-CORT was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CENPS-CORT Gene

ENSEMBL:
Gene Tree for CENPS-CORT (if available)
TreeFam:
Gene Tree for CENPS-CORT (if available)

Paralogs for CENPS-CORT Gene

Paralogs for CENPS-CORT Gene

genes like me logo Genes that share paralogs with CENPS-CORT: view

Variants for CENPS-CORT Gene

Sequence variations from dbSNP and Humsavar for CENPS-CORT Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000356299 -- 10,442,091(+) G/A intron_variant
rs1000780672 -- 10,437,962(+) A/G intron_variant
rs1000904944 -- 10,431,427(+) C/T intron_variant
rs1001106622 -- 10,444,503(+) C/T intron_variant
rs1001417607 -- 10,448,348(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CENPS-CORT Gene

Variant ID Type Subtype PubMed ID
esv2758920 CNV gain+loss 17122850
esv2764192 CNV gain 21179565

Variation tolerance for CENPS-CORT Gene

Residual Variation Intolerance Score: 30.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.33; 7.24% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CENPS-CORT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CENPS-CORT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CENPS-CORT Gene

Disorders for CENPS-CORT Gene

No disorders were found for CENPS-CORT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CENPS-CORT Gene

Publications for CENPS-CORT Gene

  1. The Dual Estrogen Receptor α Inhibitory Effects of the Tissue-Selective Estrogen Complex for Endometrial and Breast Safety. (PMID: 26487511) Han SJ … O'Malley BW (Molecular pharmacology 2016) 3 58
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58
  3. A novel 1p36.2 located gene, APITD1, with tumour-suppressive properties and a putative p53-binding domain, shows low expression in neuroblastoma tumours. (PMID: 15328517) Krona C … Martinsson T (British journal of cancer 2004) 3 58
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for CENPS-CORT Gene

Sources for CENPS-CORT Gene

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