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Aliases for CENPBD1P1 Gene

Aliases for CENPBD1P1 Gene

  • CENPB DNA-Binding Domains Containing 1 Pseudogene 1 2 3 5
  • CENPBD1 Pseudogene 1 2 3

External Ids for CENPBD1P1 Gene

Previous GeneCards Identifiers for CENPBD1P1 Gene

  • GC19P059300
  • GC19P058574

Summaries for CENPBD1P1 Gene

GeneCards Summary for CENPBD1P1 Gene

CENPBD1P1 (CENPB DNA-Binding Domains Containing 1 Pseudogene 1) is a Pseudogene.

Additional gene information for CENPBD1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPBD1P1 Gene

Genomics for CENPBD1P1 Gene

GeneHancer (GH) Regulatory Elements for CENPBD1P1 Gene

Promoters and enhancers for CENPBD1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J058571 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 668.4 +0.7 716 4.8 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MZF1 CENPBD1P1 TRIM28 ZSCAN18 ZNF446 LOC100128398 ZNF135 ZNF132 ZNF418 ENSG00000268201
GH19J058517 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.2 -53.8 -53795 4.9 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 ZBTB45 PIR40518 SLC27A5 ZNF324B TRIM28 ZNF446 ZNF134 ZNF417 ZNF274 ZNF549
GH19J058553 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 16.5 -16.4 -16390 7.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 UBE2M CHMP2A TRIM28 ZNF417 ZNF134 ZNF606 ZNF274 ZNF586 MZF1 LOC100128398
GH19J058511 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 13.1 -60.3 -60255 3.9 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B E2F8 SLC27A5 LOC105372486 ZNF584 ZNF446 ZNF606 ZNF549 CENPBD1P1 ZNF417 ZNF134 ZNF776
GH19J058543 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -27.9 -27928 5 HDGF FOXA2 PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 TRIM28 RN7SL525P ZNF584 ZNF446 ZNF606 LOC100128398 ZNF417 ENSG00000268201 ZNF134 CENPBD1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CENPBD1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CENPBD1P1 Gene

Genomic Locations for CENPBD1P1 Gene
chr19:58,573,503-58,599,801
(GRCh38/hg38)
Size:
26,299 bases
Orientation:
Plus strand
chr19:59,084,870-59,111,168
(GRCh37/hg19)
Size:
26,299 bases
Orientation:
Plus strand

Genomic View for CENPBD1P1 Gene

Genes around CENPBD1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CENPBD1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CENPBD1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPBD1P1 Gene

Proteins for CENPBD1P1 Gene

Post-translational modifications for CENPBD1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CENPBD1P1 Gene

Domains & Families for CENPBD1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CENPBD1P1 Gene

Function for CENPBD1P1 Gene

Phenotypes for CENPBD1P1 Gene

genes like me logo Genes that share phenotypes with CENPBD1P1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CENPBD1P1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CENPBD1P1 Gene

Localization for CENPBD1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CENPBD1P1 Gene

Pathways & Interactions for CENPBD1P1 Gene

SuperPathways for CENPBD1P1 Gene

No Data Available

Interacting Proteins for CENPBD1P1 Gene

Gene Ontology (GO) - Biological Process for CENPBD1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CENPBD1P1 Gene

Drugs & Compounds for CENPBD1P1 Gene

No Compound Related Data Available

Transcripts for CENPBD1P1 Gene

mRNA/cDNA for CENPBD1P1 Gene

(1) REFSEQ mRNAs :
(223) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CENPBD1P1

Alternative Splicing Database (ASD) splice patterns (SP) for CENPBD1P1 Gene

No ASD Table

Relevant External Links for CENPBD1P1 Gene

GeneLoc Exon Structure for
CENPBD1P1
ECgene alternative splicing isoforms for
CENPBD1P1

Expression for CENPBD1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CENPBD1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CENPBD1P1 Gene:

CENPBD1P1
genes like me logo Genes that share expression patterns with CENPBD1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CENPBD1P1 Gene

Orthologs for CENPBD1P1 Gene

Evolution for CENPBD1P1 Gene

ENSEMBL:
Gene Tree for CENPBD1P1 (if available)
TreeFam:
Gene Tree for CENPBD1P1 (if available)

No data available for Orthologs for CENPBD1P1 Gene

Paralogs for CENPBD1P1 Gene

No data available for Paralogs for CENPBD1P1 Gene

Variants for CENPBD1P1 Gene

Sequence variations from dbSNP and Humsavar for CENPBD1P1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000190460 -- 58,578,842(+) A/T intron_variant
rs1000221594 -- 58,578,582(+) A/G intron_variant
rs1000475143 -- 58,582,468(+) C/A non_coding_transcript_variant
rs1000492014 -- 58,580,284(+) C/T intron_variant
rs1000565423 -- 58,580,029(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CENPBD1P1 Gene

Variant ID Type Subtype PubMed ID
dgv3687n100 CNV gain 25217958
dgv3688n100 CNV gain 25217958
nsv1057077 CNV gain 25217958
nsv1057206 CNV gain 25217958
nsv1160670 CNV deletion 26073780
nsv515731 CNV gain+loss 19592680
nsv828657 CNV gain 20364138
nsv952156 CNV deletion 24416366

Additional Variant Information for CENPBD1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CENPBD1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CENPBD1P1 Gene

Disorders for CENPBD1P1 Gene

Additional Disease Information for CENPBD1P1

No disorders were found for CENPBD1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CENPBD1P1 Gene

Publications for CENPBD1P1 Gene

  1. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland SL … Hayden MR (Human molecular genetics 2014) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for CENPBD1P1 Gene

Sources for CENPBD1P1 Gene

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