CECR9 Gene (RNA Gene)

Cat Eye Syndrome Chromosome Region, Candidate 9

GC22P017329
GIFtS:
14
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Aliases for CECR9 Gene

Subcategory (RNA class) for CECR9 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for CECR9 Gene

  • Cat Eye Syndrome Chromosome Region, Candidate 9 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 9 (Non-Protein Coding) 2 3
  • Putative Cat Eye Syndrome Critical Region Protein 9 3 4
  • CECR9 2 5
  • HSALNG0133890 164

External Ids for CECR9 Gene

Previous GeneCards Identifiers for CECR9 Gene

  • GC22P014689
  • GC22U900023
  • GC22P017745
  • GC22P017813

Summaries for CECR9 Gene

GeneCards Summary for CECR9 Gene

CECR9 (Cat Eye Syndrome Chromosome Region, Candidate 9) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CECR9 include Cat Eye Syndrome.

Additional gene information for CECR9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CECR9 Gene

Genomics for CECR9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CECR9 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22J017329 Enhancer 0.7 ENCODE 600.7 +0.3 253 0.2 CEBPG CREB1 TARDBP FOXA1 SP1 RFX1 CTBP1 FOXA2 ATF3 YY1 CECR9 lnc-CECR2-6 CECR2 ADA2
GH22J017303 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 -25.0 -25032 2.8 SP1 BACH1 ZNF143 RELA IKZF2 EED DPF2 RELB RUNX3 GATAD2B piR-55036-049 CECR9 ADA2 CECR2
GH22J017307 Enhancer 0.5 Ensembl ENCODE 0.4 -21.3 -21300 0.7 ZNF512 YY1 piR-55036-049 CECR9 ADA2 CECR2
GH22J017319 Enhancer 0.3 Ensembl 0.4 -9.4 -9432 1.2 ZFHX2 CECR9 piR-55036-049 CECR2 ADA2
GH22J017306 Enhancer 0.2 Ensembl 0.4 -22.1 -22132 0.2 piR-55036-049 CECR9 ADA2 CECR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CECR9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CECR9 Gene

Genomic Locations for CECR9 Gene
chr22:17,329,033-17,329,232
(GRCh38/hg38)
Size:
200 bases
Orientation:
Plus strand
chr22:17,809,924-17,810,122
(GRCh37/hg19)
Size:
199 bases
Orientation:
Plus strand

Genomic View for CECR9 Gene

Genes around CECR9 on UCSC Golden Path with GeneCards custom track
CECR9 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CECR9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR9 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for CECR9 Gene

Proteins for CECR9 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CECR9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C854-CECR9_HUMAN
    Recommended name:
    Putative cat eye syndrome critical region protein 9
    Protein Accession:
    P0C854

    Protein attributes for CECR9 Gene

    Size:
    216 amino acids
    Molecular mass:
    23602 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Candidate gene for the Cat Eye Syndrome (CES), a developmental disorder associated with the duplication of a 2 Mb region of 22q11.2. Duplication usually takes in the form of a surpernumerary bisatellited isodicentric chromosome, resulting in four copies of the region (represents an inv dup(22)(q11)). CES is characterized clinically by the combination of coloboma of the iris and anal atresia with fistula, downslanting palpebral fissures, preauricular tags and/or pits, frequent occurrence of heart and renal malformations, and normal or near-normal mental development.

neXtProt entry for CECR9 Gene

Post-translational modifications for CECR9 Gene

  • Glycosylation at Asn148

No data available for DME Specific Peptides for CECR9 Gene

Domains & Families for CECR9 Gene

Gene Families for CECR9 Gene

HGNC:

Protein Domains for CECR9 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CECR9 Gene

GenScript: Design optimal peptide antigens:
  • Putative cat eye syndrome critical region protein 9 (CECR9_HUMAN)
genes like me logo Genes that share domains with CECR9: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CECR9 Gene

Function for CECR9 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CECR9 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR9 Gene

Localization for CECR9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CECR9 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for CECR9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with CECR9: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CECR9 Gene

Pathways & Interactions for CECR9 Gene

PathCards logo

SuperPathways for CECR9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CECR9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CECR9 Gene

Drugs & Compounds for CECR9 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CECR9 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CECR9 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BF691_9606 lncRNA 199 1

HGNC: 1847,

URS0000E91865_9606 lncRNA 200 1

LncBook: HSALNT0288915,

CECR9 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CECR9 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CECR9 Gene

No ASD Table

Relevant External Links for CECR9 Gene

GeneLoc Exon Structure for
CECR9

Expression for CECR9 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CECR9 Gene

mRNA expression in normal human tissues for CECR9 Gene
mRNA expression by GTEx for CECR9 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CECR9

SOURCE GeneReport for Unigene cluster for CECR9 Gene:

Hs.542791

mRNA Expression by UniProt/SwissProt for CECR9 Gene:

P0C854-CECR9_HUMAN
Tissue specificity: Ubiquitously expressed with higher expression in heart.
genes like me logo Genes that share expression patterns with CECR9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CECR9 Gene

Orthologs for CECR9 Gene

Evolution for CECR9 Gene

ENSEMBL:
Gene Tree for CECR9 (if available)
TreeFam:
Gene Tree for CECR9 (if available)

No data available for Orthologs for CECR9 Gene

Paralogs for CECR9 Gene

No data available for Paralogs for CECR9 Gene

Variants for CECR9 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for CECR9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CECR9

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CECR9 Gene

Disorders for CECR9 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CECR9 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards
Search CECR9 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for CECR9

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with CECR9: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR9 Gene

Publications for CECR9 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz TK … McDermid HE (Genome research 2001) 2 3 4
  2. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I … O'Brien KP (Nature 1999) 3 4

ExternalLinks

View latest publications for CECR9 gene in Mastermind

Products for CECR9 Gene

Sources for CECR9 Gene