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Aliases for CECR3 Gene
Subcategory (RNA class) for CECR3 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for CECR3 Gene
External Ids for CECR3 Gene
- HGNC: 1841
- Entrez Gene: 27442
- Ensembl: ENSG00000241832
Previous GeneCards Identifiers for CECR3 Gene
- GC22U990108
- GC22M017738
Summaries for CECR3 Gene
GeneCards Summary for CECR3 Gene
CECR3 (Cat Eye Syndrome Chromosome Region, Candidate 3) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CECR3 include Cat Eye Syndrome and Mastoiditis.
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CECR3 Gene
Genomics for CECR3 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for CECR3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CECR3 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for CECR3 Gene
Genomic Locations for CECR3 Gene
- chr22:17,256,859-17,266,734
- (GRCh38/hg38)
- Size:
- 9,876 bases
- Orientation:
- Minus strand
- chr22:17,737,749-17,747,623
- (GRCh37/hg19)
- Size:
- 9,875 bases
- Orientation:
- Minus strand
Genomic View for CECR3 Gene
Genes around CECR3 on UCSC Golden Path with GeneCards custom track
CECR3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 22q11.1 by HGNC
- 22q11.1 by Entrez Gene
- 22q11.1 by Ensembl
CECR3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CECR3 Gene
Proteins for CECR3 Gene
Post-translational modifications for CECR3 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CECR3
- Origene Custom Protein Services for CECR3
No data available for DME Specific Peptides for CECR3 Gene
Domains & Families for CECR3 Gene
Gene Families for CECR3 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CECR3 Gene
Function for CECR3 Gene
Phenotypes From GWAS Catalog for CECR3 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CECR3 - Select products 50% OFF >
- * CECR3 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CECR3
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CECR3 - Select products 50% OFF >
- * CECR3 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR3 Gene
Localization for CECR3 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CECR3 Gene
Transcripts for CECR3 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for CECR3 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075CE85_9606 | lncRNA | 1915 | 6 |
HGNC: 1841, RefSeq: NR_038398, Ensembl: ENST00000428828 (view in UCSC) , LncBook: HSALNT0275048, LNCipedia: CECR3:1, NONCODE: NONHSAT083203.2, |
| URS00009B3A74_9606 | lncRNA | 1915 | 2 |
LncBook: HSALNT0275049, NONCODE: NONHSAT192603.1, |
| URS00008B1FEF_9606 | lncRNA | 1914 | 1 |
LNCipedia: CECR3:2, |
CECR3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for CECR3 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CECR3 - Select products 50% OFF >
- * CECR3 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CECR3
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CECR3 - Select products 50% OFF >
- * CECR3 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for CECR3 Gene
- GeneLoc Exon Structure for
- CECR3
Expression for CECR3 Gene
mRNA differential expression in normal tissues according to GTEx for CECR3 Gene
This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x6.3), Pancreas (x5.9), Colon - Transverse (x5.0), and Muscle - Skeletal (x4.3).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CECR3
SOURCE GeneReport for Unigene cluster for CECR3 Gene:
Hs.517394Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CECR3 Gene
Orthologs for CECR3 Gene
No data available for Orthologs for CECR3 Gene
Paralogs for CECR3 Gene
No data available for Paralogs for CECR3 Gene
Variants for CECR3 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3647209 | CNV | gain | 21293372 |
| esv3647213 | CNV | gain | 21293372 |
| esv3893427 | CNV | gain | 25118596 |
| nsv1067241 | CNV | loss | 25217958 |
| nsv476663 | CNV | novel sequence insertion | 20440878 |
| nsv509805 | CNV | insertion | 20534489 |
Additional Variant Information for CECR3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CECR3
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CECR3 Gene
Disorders for CECR3 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| cat eye syndrome |
|
|
| mastoiditis |
|
|
Search CECR3 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for CECR3
No data available for UniProtKB/Swiss-Prot and Genatlas for CECR3 Gene
Publications for CECR3 Gene
- Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz TK … McDermid HE (Genome research 2001) 2 3
ExternalLinks
Products for CECR3 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CECR3
- Origene Custom Protein Services for CECR3
- Browse OriGene Inhibitory RNA Products For CECR3
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CECR3
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CECR3
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CECR3
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CECR3
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CECR3
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CECR3
Sources for CECR3 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB