Aliases for CECR3 Gene

Subcategory (RNA class) for CECR3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CECR3 Gene

  • Cat Eye Syndrome Chromosome Region, Candidate 3 2 3 5
  • CECR3 2 5 165
  • Cat Eye Syndrome Chromosome Region, Candidate 3 (Non-Protein Coding) 2 3
  • NONHSAG033200.2 91
  • HSALNG0133887 164

External Ids for CECR3 Gene

Previous GeneCards Identifiers for CECR3 Gene

  • GC22U990108
  • GC22M017738

Summaries for CECR3 Gene

GeneCards Summary for CECR3 Gene

CECR3 (Cat Eye Syndrome Chromosome Region, Candidate 3) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CECR3 include Cat Eye Syndrome and Mastoiditis.

Additional gene information for CECR3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CECR3 Gene

Genomics for CECR3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CECR3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J017262 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 557 6.6 CTCF TEAD4 PRDM10 ZIC2 POLR2A PATZ1 RAD21 ZNF341 SCRT2 ZBTB20 CECR3 CECR2 ADA2 lnc-CECR2-2
GH22J017216 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE 12.5 +47.7 47715 5.7 SP1 TEAD4 RELA IKZF2 POLR2A TRIM22 PKNOX1 EED ARID3A DPF2 ADA2 piR-43105-414 CECR3 CECR2 ATP6V1E1 BCL2L13 IL17RA lnc-IL17RA-34 HDHD5
GH22J017198 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 11.8 +67.6 67578 2.9 RFX1 KDM1A POLR2A SOX6 ZNF341 RAD21 YY1 NR2F2 ZFHX2 SIN3A LOC107985573 ADA2 CECR3 CECR2 TMEM121B LINC01664 ENSG00000236325 lnc-IL17RA-8 HDHD5
GH22J017475 Promoter/Enhancer 1.1 Ensembl ENCODE 11 -210.2 -210194 1.9 PRDM10 ZNF629 ZNF692 JUND PATZ1 HDAC1 SOX6 ZNF341 FOXJ2 EP300 CECR2 ADA2 CECR3 RF00017-3744 lnc-ATP6V1E1-4 SLC25A18
GH22J017233 Enhancer 0.8 FANTOM5 ENCODE 13 +32.1 32068 3.2 CTCF KDM1A PRDM1 POLR2A YY1 ZNF623 SIN3A ZNF143 RAD21 NANOG ADA2 CECR3 CECR2 GAB4 HDHD5 HSALNG0133883 piR-38580-192
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CECR3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CECR3 Gene

Genomic Locations for CECR3 Gene
chr22:17,256,859-17,266,734
(GRCh38/hg38)
Size:
9,876 bases
Orientation:
Minus strand
chr22:17,737,749-17,747,623
(GRCh37/hg19)
Size:
9,875 bases
Orientation:
Minus strand

Genomic View for CECR3 Gene

Genes around CECR3 on UCSC Golden Path with GeneCards custom track
CECR3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CECR3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CECR3 Gene

Proteins for CECR3 Gene

No data available for DME Specific Peptides for CECR3 Gene

Domains & Families for CECR3 Gene

Gene Families for CECR3 Gene

genes like me logo Genes that share domains with CECR3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CECR3 Gene

Function for CECR3 Gene

Phenotypes From GWAS Catalog for CECR3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR3 Gene

Localization for CECR3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CECR3 Gene

Pathways & Interactions for CECR3 Gene

PathCards logo

SuperPathways for CECR3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CECR3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CECR3 Gene

Drugs & Compounds for CECR3 Gene

No Compound Related Data Available

Transcripts for CECR3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CECR3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CE85_9606 lncRNA 1915 6

HGNC: 1841,

RefSeq: NR_038398,

Ensembl: ENST00000428828 (view in UCSC) ,

LncBook: HSALNT0275048,

LNCipedia: CECR3:1,

NONCODE: NONHSAT083203.2,

URS00009B3A74_9606 lncRNA 1915 2

LncBook: HSALNT0275049,

NONCODE: NONHSAT192603.1,

URS00008B1FEF_9606 lncRNA 1914 1

LNCipedia: CECR3:2,

CECR3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CECR3 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CECR3 Gene

No ASD Table

Relevant External Links for CECR3 Gene

GeneLoc Exon Structure for
CECR3

Expression for CECR3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CECR3 Gene

mRNA differential expression in normal tissues according to GTEx for CECR3 Gene

This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x6.3), Pancreas (x5.9), Colon - Transverse (x5.0), and Muscle - Skeletal (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CECR3

SOURCE GeneReport for Unigene cluster for CECR3 Gene:

Hs.517394
genes like me logo Genes that share expression patterns with CECR3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CECR3 Gene

Orthologs for CECR3 Gene

Evolution for CECR3 Gene

ENSEMBL:
Gene Tree for CECR3 (if available)
TreeFam:
Gene Tree for CECR3 (if available)

No data available for Orthologs for CECR3 Gene

Paralogs for CECR3 Gene

No data available for Paralogs for CECR3 Gene

Variants for CECR3 Gene

Additional dbSNP identifiers (rs#s) for CECR3 Gene

Structural Variations from Database of Genomic Variants (DGV) for CECR3 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
esv3647213 CNV gain 21293372
esv3893427 CNV gain 25118596
nsv1067241 CNV loss 25217958
nsv476663 CNV novel sequence insertion 20440878
nsv509805 CNV insertion 20534489

Additional Variant Information for CECR3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CECR3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CECR3 Gene

Disorders for CECR3 Gene

MalaCards: The human disease database

(2) MalaCards diseases for CECR3 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
mastoiditis
- elite association - COSMIC cancer census association via MalaCards
Search CECR3 in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with CECR3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR3 Gene

Publications for CECR3 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz TK … McDermid HE (Genome research 2001) 2 3

Products for CECR3 Gene

Sources for CECR3 Gene