Aliases for CECR3 Gene

Subcategory (RNA class) for CECR3 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for CECR3 Gene

  • Cat Eye Syndrome Chromosome Region, Candidate 3 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 3 (Non-Protein Coding) 2 3
  • CECR3 2 170
  • HSALNG0133887 169
  • NONHSAG033200 94

External Ids for CECR3 Gene

Previous GeneCards Identifiers for CECR3 Gene

  • GC22U990108
  • GC22M017738

Summaries for CECR3 Gene

GeneCards Summary for CECR3 Gene

CECR3 (Cat Eye Syndrome Chromosome Region, Candidate 3) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CECR3 include Cat Eye Syndrome.

Additional gene information for CECR3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CECR3 Gene

Genomics for CECR3 Gene

GeneHancer (GH) Regulatory Elements for CECR3 Gene

Promoters and enhancers for CECR3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J017262 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.6 557 6.6 RAD21 ZNF384 SP7 POLR2A ZBTB33 ZIC2 PRDM10 ZEB2 PATZ1 ZBTB20 CECR3 CECR2 lnc-CECR2-2
GH22J017216 Promoter/Enhancer 1.6 EPDnew FANTOM5 Ensembl ENCODE 12.5 +47.7 47715 5.7 SP1 MYC ETV6 RELA POU5F1 POLR2A MLLT1 ZNF687 IKZF1 PKNOX1 ADA2 piR-43105-414 CECR3 CECR2 ATP6V1E1 BCL2L13 IL17RA lnc-IL17RA-34
GH22J017198 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 11.8 +67.6 67578 2.9 SP1 RFX1 POLR2A SOX6 ZFHX2 SIN3A KDM1A HNF4A ADA2 CECR3 CECR2 LINC01664 TMEM121B ENSG00000236325 lnc-IL17RA-8 lnc-IL17RA-9
GH22J017475 Promoter/Enhancer 1.1 Ensembl ENCODE 11 -210.2 -210194 1.9 ZNF785 BCL6B SP7 TRIM24 ZNF404 PKNOX1 PRDM10 ATF1 ZEB2 ZNF629 CECR2 ADA2 CECR3 lnc-ATP6V1E1-4 RF00017-3742
GH22J017233 Enhancer 0.8 FANTOM5 ENCODE 13 +32.1 32068 3.2 POU5F1 SP1 PRDM1 POLR2A CTCF ZNF623 ZNF143 SIN3A BACH1 NANOG ADA2 CECR3 CECR2 GAB4 HDHD5 HSALNG0133883 piR-38580-192
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CECR3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CECR3 Gene

Genomic Locations for CECR3 Gene
chr22:17,256,859-17,266,734
(GRCh38/hg38)
Size:
9,876 bases
Orientation:
Minus strand
chr22:17,737,749-17,747,623
(GRCh37/hg19)
Size:
9,875 bases
Orientation:
Minus strand

Genomic View for CECR3 Gene

Genes around CECR3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CECR3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CECR3 Gene

Proteins for CECR3 Gene

No data available for DME Specific Peptides for CECR3 Gene

Domains & Families for CECR3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CECR3 Gene

Function for CECR3 Gene

Phenotypes From GWAS Catalog for CECR3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR3 Gene

Localization for CECR3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CECR3 Gene

Pathways & Interactions for CECR3 Gene

PathCards logo

SuperPathways for CECR3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CECR3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CECR3 Gene

Drugs & Compounds for CECR3 Gene

No Compound Related Data Available

Transcripts for CECR3 Gene

mRNA/cDNA for CECR3 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(2) LNCipedia transcripts :
(2) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CECR3 Gene

No ASD Table

Relevant External Links for CECR3 Gene

GeneLoc Exon Structure for
CECR3
ECgene alternative splicing isoforms for
CECR3

Expression for CECR3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CECR3 Gene

mRNA differential expression in normal tissues according to GTEx for CECR3 Gene

This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x6.3), Pancreas (x5.9), Colon - Transverse (x5.0), and Muscle - Skeletal (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of CECR3 Gene:

CECR3

SOURCE GeneReport for Unigene cluster for CECR3 Gene:

Hs.517394
genes like me logo Genes that share expression patterns with CECR3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CECR3 Gene

Orthologs for CECR3 Gene

Evolution for CECR3 Gene

ENSEMBL:
Gene Tree for CECR3 (if available)
TreeFam:
Gene Tree for CECR3 (if available)

No data available for Orthologs for CECR3 Gene

Paralogs for CECR3 Gene

No data available for Paralogs for CECR3 Gene

Variants for CECR3 Gene

Sequence variations from dbSNP and Humsavar for CECR3 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000221324 -- 17,258,852(-) G/C intron_variant
rs1000251032 -- 17,259,060(-) C/T intron_variant
rs1000422988 -- 17,264,457(-) C/T intron_variant
rs1000920074 -- 17,268,283(-) C/G upstream_transcript_variant
rs1001222660 -- 17,257,894(-) TTTTTTTTTT/TTTTTTTTT/TTTTTTTTTTT non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CECR3 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
esv3647213 CNV gain 21293372
esv3893427 CNV gain 25118596
nsv1067241 CNV loss 25217958
nsv476663 CNV novel sequence insertion 20440878
nsv509805 CNV insertion 20534489

Additional Variant Information for CECR3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CECR3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CECR3 Gene

Disorders for CECR3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CECR3 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards
Search CECR3 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for CECR3

genes like me logo Genes that share disorders with CECR3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR3 Gene

Publications for CECR3 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz TK … McDermid HE (Genome research 2001) 2 3 56

Products for CECR3 Gene

Sources for CECR3 Gene