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Aliases for CEBPB-AS1 Gene

Subcategory (RNA class) for CEBPB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CEBPB-AS1 Gene

  • CEBPB Antisense RNA 1 2 3 5

External Ids for CEBPB-AS1 Gene

Summaries for CEBPB-AS1 Gene

GeneCards Summary for CEBPB-AS1 Gene

CEBPB-AS1 (CEBPB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CEBPB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEBPB-AS1 Gene

Genomics for CEBPB-AS1 Gene

GeneHancer (GH) Regulatory Elements for CEBPB-AS1 Gene

Promoters and enhancers for CEBPB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I050186 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.8 791 10.3 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 CEBPB CEBPB-AS1 GC20P050191 ADNP DDX27 DPM1 MOCS3 ENSG00000232043 SNORD12B LINC01273
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CEBPB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CEBPB-AS1 Gene

Genomic Locations for CEBPB-AS1 Gene
chr20:50,184,598-50,192,069
(GRCh38/hg38)
Size:
7,472 bases
Orientation:
Minus strand

Genomic View for CEBPB-AS1 Gene

Genes around CEBPB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEBPB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEBPB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEBPB-AS1 Gene

Proteins for CEBPB-AS1 Gene

Post-translational modifications for CEBPB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEBPB-AS1 Gene

Domains & Families for CEBPB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEBPB-AS1 Gene

Function for CEBPB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEBPB-AS1 Gene

Localization for CEBPB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CEBPB-AS1 Gene

Pathways & Interactions for CEBPB-AS1 Gene

SuperPathways for CEBPB-AS1 Gene

No Data Available

Interacting Proteins for CEBPB-AS1 Gene

Gene Ontology (GO) - Biological Process for CEBPB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEBPB-AS1 Gene

Drugs & Compounds for CEBPB-AS1 Gene

No Compound Related Data Available

Transcripts for CEBPB-AS1 Gene

mRNA/cDNA for CEBPB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CEBPB-AS1 Gene

No ASD Table

Relevant External Links for CEBPB-AS1 Gene

GeneLoc Exon Structure for
CEBPB-AS1
ECgene alternative splicing isoforms for
CEBPB-AS1

Expression for CEBPB-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEBPB-AS1 Gene

Orthologs for CEBPB-AS1 Gene

Evolution for CEBPB-AS1 Gene

ENSEMBL:
Gene Tree for CEBPB-AS1 (if available)
TreeFam:
Gene Tree for CEBPB-AS1 (if available)

No data available for Orthologs for CEBPB-AS1 Gene

Paralogs for CEBPB-AS1 Gene

No data available for Paralogs for CEBPB-AS1 Gene

Variants for CEBPB-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEBPB-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000008468 -- 50,191,091(-) G/T intron_variant
rs1000093408 -- 50,185,332(-) G/A non_coding_transcript_variant
rs1000232310 -- 50,184,639(-) C/T non_coding_transcript_variant
rs1000467250 -- 50,190,593(-) G/C/T intron_variant
rs1000571319 -- 50,186,003(-) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CEBPB-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv828736 CNV gain 20364138
nsv1061982 CNV loss 25217958
esv34129 CNV loss 18971310
dgv702n67 CNV gain 20364138

Additional Variant Information for CEBPB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEBPB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEBPB-AS1 Gene

Disorders for CEBPB-AS1 Gene

Additional Disease Information for CEBPB-AS1

No disorders were found for CEBPB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEBPB-AS1 Gene

Publications for CEBPB-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CEBPB-AS1 Gene

Sources for CEBPB-AS1 Gene

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