Aliases for CEBPB-AS1 Gene

Data sources for CEBPB-AS1 Gene:

Subcategory (RNA class) for CEBPB-AS1 Gene

lncRNA

Aliases for CEBPB-AS1 Gene

External Ids for CEBPB-AS1 Gene

Summaries for CEBPB-AS1 Gene

GeneCards Summary for CEBPB-AS1 Gene

CEBPB-AS1 (CEBPB Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CEBPB-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CEBPB-AS1 Gene

Genomics for CEBPB-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CEBPB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J050186 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.7 699 10.3 CHD2 TBP ZBTB10 MXD4 FEZF1 CEBPA FOXA1 MNT DEK IKZF1 CEBPB CEBPB-AS1 MN297832 NONHSAG031997.2 ADNP DDX27 DPM1 PSMD10P1 ENSG00000232043 LINC01273
GH20J050184 Enhancer 0.3 Ensembl 0.4 +7.4 7371 1.2 GATAD2B LINC01273 HSALNG0130737 CEBPB CEBPB-AS1 PEDS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CEBPB-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CEBPB-AS1 Gene

Latest Assembly
chr20:50,184,313-50,192,172
(GRCh38/hg38)
Size:
7,860 bases
Orientation:
Minus strand

Previous Assembly
chr20:48,801,140-48,808,606
(GRCh37/hg19 by Entrez Gene)
Size:
7,467 bases
Orientation:
Minus strand

Genomic View for CEBPB-AS1 Gene

Genes around CEBPB-AS1 on UCSC Golden Path with GeneCards custom track
CEBPB-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CEBPB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEBPB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEBPB-AS1 Gene

Proteins for CEBPB-AS1 Gene

Post-translational modifications for CEBPB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEBPB-AS1 Gene

Domains & Families for CEBPB-AS1 Gene

Gene Families for CEBPB-AS1 Gene

genes like me logo Genes that share domains with CEBPB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CEBPB-AS1 Gene

Function for CEBPB-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEBPB-AS1 Gene

Localization for CEBPB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CEBPB-AS1 Gene

Pathways & Interactions for CEBPB-AS1 Gene

PathCards logo

SuperPathways for CEBPB-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CEBPB-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CEBPB-AS1 Gene

Drugs & Compounds for CEBPB-AS1 Gene

No Compound Related Data Available

Transcripts for CEBPB-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CEBPB-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E368D_9606 lncRNA 2973 2

RefSeq: NR_125739,

LNCipedia: CEBPB-AS1:1,

URS0000788CE7_9606 lncRNA 2648 2

Ensembl: ENST00000613921 (view in UCSC) ,

LNCipedia: CEBPB-AS1:2,

URS0001BE4C0D_9606 lncRNA 4278 1

LncBook: HSALNT0268557,

URS0001BF4425_9606 lncRNA 4144 1

LncBook: HSALNT0268553,

URS0001BE9A30_9606 lncRNA 4122 1

LncBook: HSALNT0268555,

CEBPB-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CEBPB-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CEBPB-AS1 Gene

No ASD Table

Relevant External Links for CEBPB-AS1 Gene

GeneLoc Exon Structure for
CEBPB-AS1

Expression for CEBPB-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CEBPB-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEBPB-AS1 Gene

Orthologs for CEBPB-AS1 Gene

Evolution for CEBPB-AS1 Gene

ENSEMBL:
Gene Tree for CEBPB-AS1 (if available)
TreeFam:
Gene Tree for CEBPB-AS1 (if available)

No data available for Orthologs for CEBPB-AS1 Gene

Paralogs for CEBPB-AS1 Gene

No data available for Paralogs for CEBPB-AS1 Gene

Variants for CEBPB-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CEBPB-AS1 Gene

SNP ID Clinical significance and condition Chr 20 pos Variation AA Info Type
rs541523592 Likely Benign: not provided 50,191,078(-) G/A
NM_005194.4(CEBPB):c.45G>A (p.Pro15=)
SYNONYMOUS_VARIANT,FIVE_PRIME_UTR

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CEBPB-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CEBPB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv702n67 CNV gain 20364138
esv34129 CNV loss 18971310
nsv1061982 CNV loss 25217958
nsv828736 CNV gain 20364138

Additional Variant Information for CEBPB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEBPB-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEBPB-AS1 Gene

Disorders for CEBPB-AS1 Gene

Additional Disease Information for CEBPB-AS1

No disorders were found for CEBPB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEBPB-AS1 Gene

Publications for CEBPB-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for CEBPB-AS1 Gene

Sources for CEBPB-AS1 Gene