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Aliases for CEBPA-DT Gene

Subcategory (RNA class) for CEBPA-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CEBPA-DT Gene

  • CEBPA Divergent Transcript 2 3 5
  • CEBPA Antisense RNA 1 (Non-Protein Coding) 2 3
  • CEBPA Antisense RNA 1 (Head To Head) 2 3
  • CEBPA Antisense RNA 1 2
  • CEBPA-AS1 3

External Ids for CEBPA-DT Gene

Previous HGNC Symbols for CEBPA-DT Gene

  • CEBPA-AS1

Summaries for CEBPA-DT Gene

GeneCards Summary for CEBPA-DT Gene

CEBPA-DT (CEBPA Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CEBPA-DT include Oral Squamous Cell Carcinoma and Gastric Cancer.

Additional gene information for CEBPA-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEBPA-DT Gene

Genomics for CEBPA-DT Gene

GeneHancer (GH) Regulatory Elements for CEBPA-DT Gene

Promoters and enhancers for CEBPA-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CEBPA-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CEBPA-DT Gene

Genomic Locations for CEBPA-DT Gene
chr19:33,302,857-33,305,057
(GRCh38/hg38)
Size:
2,201 bases
Orientation:
Plus strand
chr19:33,793,763-33,795,960
(GRCh37/hg19)
Size:
2,198 bases
Orientation:
Plus strand

Genomic View for CEBPA-DT Gene

Genes around CEBPA-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEBPA-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEBPA-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEBPA-DT Gene

Proteins for CEBPA-DT Gene

Post-translational modifications for CEBPA-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEBPA-DT Gene

Domains & Families for CEBPA-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEBPA-DT Gene

Function for CEBPA-DT Gene

Phenotypes From GWAS Catalog for CEBPA-DT Gene

genes like me logo Genes that share phenotypes with CEBPA-DT: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEBPA-DT Gene

Localization for CEBPA-DT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CEBPA-DT gene
Compartment Confidence
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CEBPA-DT Gene

Pathways & Interactions for CEBPA-DT Gene

PathCards logo

SuperPathways for CEBPA-DT Gene

No Data Available

Interacting Proteins for CEBPA-DT Gene

Gene Ontology (GO) - Biological Process for CEBPA-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEBPA-DT Gene

Drugs & Compounds for CEBPA-DT Gene

No Compound Related Data Available

Transcripts for CEBPA-DT Gene

mRNA/cDNA for CEBPA-DT Gene

(6) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CEBPA-DT Gene

No ASD Table

Relevant External Links for CEBPA-DT Gene

GeneLoc Exon Structure for
CEBPA-DT
ECgene alternative splicing isoforms for
CEBPA-DT

Expression for CEBPA-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEBPA-DT Gene

Orthologs for CEBPA-DT Gene

Evolution for CEBPA-DT Gene

ENSEMBL:
Gene Tree for CEBPA-DT (if available)
TreeFam:
Gene Tree for CEBPA-DT (if available)

No data available for Orthologs for CEBPA-DT Gene

Paralogs for CEBPA-DT Gene

No data available for Paralogs for CEBPA-DT Gene

Variants for CEBPA-DT Gene

Sequence variations from dbSNP and Humsavar for CEBPA-DT Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1007915253 uncertain-significance, Acute myeloid leukemia 33,302,374(+) G/C/T upstream_transcript_variant
rs1013724730 uncertain-significance, Acute myeloid leukemia 33,302,051(+) C/G upstream_transcript_variant
rs1027991203 uncertain-significance, Acute myeloid leukemia 33,302,090(+) G/A upstream_transcript_variant
rs1049967 benign, Acute myeloid leukemia 33,301,661(+) C/A upstream_transcript_variant
rs1054442664 likely-benign, Acute myeloid leukemia 33,302,262(+) C/A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CEBPA-DT Gene

Variant ID Type Subtype PubMed ID
esv2758755 CNV gain 17122850
nsv2463 CNV deletion 18451855
nsv833808 CNV loss 17160897

Additional Variant Information for CEBPA-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEBPA-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEBPA-DT Gene

Disorders for CEBPA-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for CEBPA-DT Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
oral squamous cell carcinoma
  • mouth squamous cell carcinoma
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with CEBPA-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CEBPA-DT Gene

Publications for CEBPA-DT Gene

  1. The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer. (PMID: 28423525) Ke D … Zheng X (Oncotarget 2017) 2 3 58
  2. Long non-coding RNA CEBPA-AS1 correlates with poor prognosis and promotes tumorigenesis via CEBPA/Bcl2 in oral squamous cell carcinoma. (PMID: 29281558) Guo Y … Zhong M (Cancer biology & therapy 2018) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CEBPA-DT Gene

Sources for CEBPA-DT Gene

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