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Aliases for CEBPA-AS1 Gene

Subcategory (RNA class) for CEBPA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CEBPA-AS1 Gene

  • CEBPA Antisense RNA 1 (Head To Head) 2 3 5
  • CEBPA Antisense RNA 1 (Non-Protein Coding) 2
  • CEBPA Antisense RNA 1 2

External Ids for CEBPA-AS1 Gene

Previous GeneCards Identifiers for CEBPA-AS1 Gene

  • GC19P033795
  • GC19P033803
  • GC19P033806

Summaries for CEBPA-AS1 Gene

GeneCards Summary for CEBPA-AS1 Gene

CEBPA-AS1 (CEBPA Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CEBPA-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEBPA-AS1 Gene

Genomics for CEBPA-AS1 Gene

GeneHancer (GH) Regulatory Elements for CEBPA-AS1 Gene

Promoters and enhancers for CEBPA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I033296 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 562.3 -1.5 -1451 10.6 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF416 ZNF143 CEBPA-AS1 CEBPA ENSG00000267580 ENSG00000267727 GC19M033302 GPATCH1 ZNF507 CEP89 LSM14A KIAA0355
GH19I033289 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -10.5 -10518 6.5 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF213 GPATCH1 LSM14A CEP89 KIAA0355 ZNF507 PDCD5 FAAP24 CEBPG WDR88 CHST8
GH19I033315 Enhancer 0.9 ENCODE dbSUPER 12.8 +14.3 14289 3.1 FOXA2 ZFP64 SIN3A MAX RAD21 YY1 HIC1 ZNF121 GATA3 ZNF776 CEBPA-AS1 GPATCH1 CEBPG PEPD PIR50844 GC19P033308 GC19P033333
GH19I033310 Enhancer 0.9 ENCODE dbSUPER 12.3 +8.3 8298 1.1 CTCF ZNF146 RAD21 GATA3 ZNF239 ZNF600 ZBTB20 SMARCA5 SCRT1 ZNF687 CEBPA-AS1 GC19P033308 PIR50844 GC19P033333
GH19I033350 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 5 +47.9 47949 1.5 PKNOX1 FOXA2 ZBTB21 INSM2 MAX ZNF704 ZNF121 ZFHX2 ZNF366 FOS CEBPG PDCD5 CHST8 CEBPA-AS1 RPS3AP50 AKR1B1P7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CEBPA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CEBPA-AS1 Gene

Genomic Locations for CEBPA-AS1 Gene
chr19:33,302,857-33,305,057
(GRCh38/hg38)
Size:
2,201 bases
Orientation:
Plus strand
chr19:33,793,763-33,795,963
(GRCh37/hg19)

Genomic View for CEBPA-AS1 Gene

Genes around CEBPA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEBPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEBPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEBPA-AS1 Gene

Proteins for CEBPA-AS1 Gene

Post-translational modifications for CEBPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEBPA-AS1 Gene

Domains & Families for CEBPA-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEBPA-AS1 Gene

Function for CEBPA-AS1 Gene

Phenotypes From GWAS Catalog for CEBPA-AS1 Gene

Phenotypes for CEBPA-AS1 Gene

GenomeRNAi human phenotypes for CEBPA-AS1:
genes like me logo Genes that share phenotypes with CEBPA-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEBPA-AS1 Gene

Localization for CEBPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CEBPA-AS1 Gene

Pathways & Interactions for CEBPA-AS1 Gene

SuperPathways for CEBPA-AS1 Gene

No Data Available

Interacting Proteins for CEBPA-AS1 Gene

Gene Ontology (GO) - Biological Process for CEBPA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEBPA-AS1 Gene

Drugs & Compounds for CEBPA-AS1 Gene

No Compound Related Data Available

Transcripts for CEBPA-AS1 Gene

mRNA/cDNA for CEBPA-AS1 Gene

(5) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CEBPA-AS1 Gene

CEBPA antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CEBPA-AS1 Gene

No ASD Table

Relevant External Links for CEBPA-AS1 Gene

GeneLoc Exon Structure for
CEBPA-AS1
ECgene alternative splicing isoforms for
CEBPA-AS1

Expression for CEBPA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CEBPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for CEBPA-AS1 Gene:

Hs.287521
genes like me logo Genes that share expression patterns with CEBPA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEBPA-AS1 Gene

Orthologs for CEBPA-AS1 Gene

Evolution for CEBPA-AS1 Gene

ENSEMBL:
Gene Tree for CEBPA-AS1 (if available)
TreeFam:
Gene Tree for CEBPA-AS1 (if available)

No data available for Orthologs for CEBPA-AS1 Gene

Paralogs for CEBPA-AS1 Gene

No data available for Paralogs for CEBPA-AS1 Gene

Variants for CEBPA-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEBPA-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1007915253 uncertain-significance, Acute myeloid leukemia 33,302,374(+) G/C/T upstream_transcript_variant
rs1027991203 uncertain-significance, Acute myeloid leukemia 33,302,090(+) G/A upstream_transcript_variant
rs1049967 benign, Acute myeloid leukemia 33,301,661(+) C/A upstream_transcript_variant
rs1060502117 uncertain-significance, Acute myeloid leukemia 33,301,370(+) A/G/T upstream_transcript_variant
rs1060502118 uncertain-significance, Acute myeloid leukemia 33,301,819(+) GC/AA upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CEBPA-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758755 CNV gain 17122850
nsv2463 CNV deletion 18451855
nsv833808 CNV loss 17160897

Additional Variant Information for CEBPA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEBPA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEBPA-AS1 Gene

Disorders for CEBPA-AS1 Gene

Additional Disease Information for CEBPA-AS1

No disorders were found for CEBPA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEBPA-AS1 Gene

Publications for CEBPA-AS1 Gene

  1. The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer. (PMID: 28423525) Ke D … Zheng X (Oncotarget 2017) 2 3 58
  2. Long non-coding RNA CEBPA-AS1 correlates with poor prognosis and promotes tumorigenesis via CEBPA/Bcl2 in oral squamous cell carcinoma. (PMID: 29281558) Guo Y … Zhong M (Cancer biology & therapy 2018) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CEBPA-AS1 Gene

Sources for CEBPA-AS1 Gene

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