Aliases for CDRT8 Gene

Subcategory (RNA class) for CDRT8 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CDRT8 Gene

  • CMT1A Duplicated Region Transcript 8 2 3 5
  • CDRT8 2 168
  • NONHSAG020901 92
  • HSALNG0114755 167

External Ids for CDRT8 Gene

Previous GeneCards Identifiers for CDRT8 Gene

  • GC17U990292
  • GC17M015009

Summaries for CDRT8 Gene

GeneCards Summary for CDRT8 Gene

CDRT8 (CMT1A Duplicated Region Transcript 8) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CDRT8 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CDRT8 Gene

Genomics for CDRT8 Gene

GeneHancer (GH) Regulatory Elements for CDRT8 Gene

Promoters and enhancers for CDRT8 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J015106 Enhancer 0.6 Ensembl 520.4 -0.7 -713 0.6 JUND FOS NFE2 ZFHX2 FOSL2 MAFG ATF3 MAFK NFE2L2 BACH1 CDRT8 piR-50443-158
GH17J015038 Enhancer 0.4 Ensembl ENCODE 6.6 +66.9 66886 1 FOS CDRT8 CDRT7 LOC101928475 ENSG00000287307
GH17J015112 Enhancer 0.4 Ensembl CraniofacialAtlas 6.2 -6.9 -6909 1 EP300 CDRT8 piR-50443-158 lnc-ZNF286A-13
GH17J015110 Enhancer 0.2 Ensembl 14.5 -4.8 -4814 0.8 CDRT8 piR-50443-158 lnc-ZNF286A-13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDRT8 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDRT8 Gene

Genomic Locations for CDRT8 Gene
chr17:15,104,984-15,106,187
(GRCh38/hg38)
Size:
1,204 bases
Orientation:
Minus strand
chr17:15,008,554-15,009,504
(GRCh37/hg19)
Size:
951 bases
Orientation:
Minus strand

Genomic View for CDRT8 Gene

Genes around CDRT8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDRT8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDRT8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT8 Gene

Proteins for CDRT8 Gene

Post-translational modifications for CDRT8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDRT8 Gene

Domains & Families for CDRT8 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CDRT8 Gene

Function for CDRT8 Gene

Phenotypes From GWAS Catalog for CDRT8 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDRT8 Gene

Localization for CDRT8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDRT8 Gene

Pathways & Interactions for CDRT8 Gene

PathCards logo

SuperPathways for CDRT8 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CDRT8 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CDRT8 Gene

Drugs & Compounds for CDRT8 Gene

No Compound Related Data Available

Transcripts for CDRT8 Gene

mRNA/cDNA for CDRT8 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT8 Gene

No ASD Table

Relevant External Links for CDRT8 Gene

GeneLoc Exon Structure for
CDRT8

Expression for CDRT8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CDRT8 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT8 Gene

This gene is overexpressed in Testis (x41.3).
genes like me logo Genes that share expression patterns with CDRT8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDRT8 Gene

Orthologs for CDRT8 Gene

Evolution for CDRT8 Gene

ENSEMBL:
Gene Tree for CDRT8 (if available)
TreeFam:
Gene Tree for CDRT8 (if available)

No data available for Orthologs for CDRT8 Gene

Paralogs for CDRT8 Gene

No data available for Paralogs for CDRT8 Gene

Variants for CDRT8 Gene

Additional dbSNP identifiers (rs#s) for CDRT8 Gene

Structural Variations from Database of Genomic Variants (DGV) for CDRT8 Gene

Variant ID Type Subtype PubMed ID
esv3640045 CNV loss 21293372
esv3640046 CNV gain 21293372
esv3640056 CNV loss 21293372
esv3892963 CNV loss 25118596
nsv1064686 CNV loss 25217958

Additional Variant Information for CDRT8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDRT8

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CDRT8 Gene

Disorders for CDRT8 Gene

Additional Disease Information for CDRT8

No disorders were found for CDRT8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDRT8 Gene

Publications for CDRT8 Gene

  1. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K … Birren B (Genome research 2001) 2 3 54

Products for CDRT8 Gene

Sources for CDRT8 Gene