Aliases for CDRT15P1 Gene

Aliases for CDRT15P1 Gene

  • CMT1A Duplicated Region Transcript 15 Pseudogene 1 2 3 5
  • CMT1A Duplicated Region Transcript 15 Pseudogene 2
  • CDRT15P 3

External Ids for CDRT15P1 Gene

Previous HGNC Symbols for CDRT15P1 Gene

  • CDRT15P

Previous GeneCards Identifiers for CDRT15P1 Gene

  • GC17P013929

Summaries for CDRT15P1 Gene

GeneCards Summary for CDRT15P1 Gene

CDRT15P1 (CMT1A Duplicated Region Transcript 15 Pseudogene 1) is a Pseudogene.

Additional gene information for CDRT15P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CDRT15P1 Gene

Genomics for CDRT15P1 Gene

GeneHancer (GH) Regulatory Elements for CDRT15P1 Gene

Promoters and enhancers for CDRT15P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J014299 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 38.9 +280.4 280366 12.1 ZNF785 ZBTB40 SP1 CTCF ZBTB6 FOXA1 RBPJ TCF7L2 CREB1 MYC HS3ST3B1 ENSG00000266709 MGC12916 piR-60685 CDRT15P1 ENSG00000262786 ENSG00000266744 RPL23AP76 LINC02096 ENSG00000232058
GH17J014068 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 34.2 +45.3 45258 3.5 SIN3A SP1 ZBTB40 RBPJ POLR2A NR2F6 ATF1 CREB1 HCFC1 MIXL1 COX10 COX10-AS1 CDRT15P1 CDRT15 RPS18P12 piR-50437-271
GH17J014010 Enhancer 0.5 Ensembl ENCODE 31.2 -14.3 -14297 1.2 USF1 FOXA2 CDRT15P1 CDRT15 lnc-COX10-2 piR-43103-022 COX10-AS1
GH17J014061 Enhancer 0.6 Ensembl ENCODE 20.4 +37.9 37854 2.1 GATA3 ZNF217 POLR2A CDRT15P1 lnc-COX10-7 COX10 COX10-AS1
GH17J014004 Enhancer 0.3 Ensembl ENCODE 30.7 -19.2 -19178 0.9 CDRT15P1 CDRT15 piR-43103-022 lnc-COX10-2 COX10-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDRT15P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDRT15P1 Gene

Genomic Locations for CDRT15P1 Gene
chr17:14,024,498-14,025,598
(GRCh38/hg38)
Size:
1,101 bases
Orientation:
Plus strand
chr17:13,927,815-13,928,915
(GRCh37/hg19)
Size:
1,101 bases
Orientation:
Plus strand

Genomic View for CDRT15P1 Gene

Genes around CDRT15P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDRT15P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDRT15P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT15P1 Gene

Proteins for CDRT15P1 Gene

Post-translational modifications for CDRT15P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDRT15P1 Gene

Domains & Families for CDRT15P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CDRT15P1 Gene

Function for CDRT15P1 Gene

Phenotypes From GWAS Catalog for CDRT15P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDRT15P1 Gene

Localization for CDRT15P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDRT15P1 Gene

Pathways & Interactions for CDRT15P1 Gene

PathCards logo

SuperPathways for CDRT15P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CDRT15P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDRT15P1 Gene

Drugs & Compounds for CDRT15P1 Gene

No Compound Related Data Available

Transcripts for CDRT15P1 Gene

mRNA/cDNA for CDRT15P1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT15P1 Gene

No ASD Table

Relevant External Links for CDRT15P1 Gene

GeneLoc Exon Structure for
CDRT15P1
ECgene alternative splicing isoforms for
CDRT15P1

Expression for CDRT15P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDRT15P1 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT15P1 Gene

This gene is overexpressed in Testis (x12.4).

NURSA nuclear receptor signaling pathways regulating expression of CDRT15P1 Gene:

CDRT15P1

SOURCE GeneReport for Unigene cluster for CDRT15P1 Gene:

Hs.709554
genes like me logo Genes that share expression patterns with CDRT15P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDRT15P1 Gene

Orthologs for CDRT15P1 Gene

Evolution for CDRT15P1 Gene

ENSEMBL:
Gene Tree for CDRT15P1 (if available)
TreeFam:
Gene Tree for CDRT15P1 (if available)

No data available for Orthologs for CDRT15P1 Gene

Paralogs for CDRT15P1 Gene

No data available for Paralogs for CDRT15P1 Gene

Variants for CDRT15P1 Gene

Sequence variations from dbSNP and Humsavar for CDRT15P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000384811 -- 14,023,956(+) C/T upstream_transcript_variant
rs1000478118 -- 14,022,722(+) G/C upstream_transcript_variant
rs1005286476 -- 14,024,798(+) A/T non_coding_transcript_variant
rs1005337020 -- 14,024,545(+) G/T non_coding_transcript_variant
rs1006523942 -- 14,024,077(+) G/A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CDRT15P1 Gene

Variant ID Type Subtype PubMed ID
esv2758675 CNV loss 17122850
nsv1056267 CNV gain 25217958
nsv1143850 CNV deletion 24896259
nsv1989 CNV deletion 18451855
nsv574377 CNV gain 21841781
nsv953831 CNV deletion 24416366
nsv978364 CNV duplication 23825009

Additional Variant Information for CDRT15P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDRT15P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDRT15P1 Gene

Disorders for CDRT15P1 Gene

Additional Disease Information for CDRT15P1

No disorders were found for CDRT15P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDRT15P1 Gene

Publications for CDRT15P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56
  2. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K … Birren B (Genome research 2001) 3 56

Products for CDRT15P1 Gene

Sources for CDRT15P1 Gene