Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CDIPTOSP Gene

Aliases for CDIPTOSP Gene

  • CDIP Transferase Opposite Strand, Pseudogene 2 3 4 5
  • CDIPT Antisense RNA 1 (Head To Head) 2 3
  • CDIPT-AS1 3 4
  • Putative Protein T-ENOL 4
  • CDIPT Antisense RNA 1 4
  • CTD-2574D22.5 3
  • T-ENOL 4

External Ids for CDIPTOSP Gene

Previous HGNC Symbols for CDIPTOSP Gene

  • CDIPT-AS1

Previous GeneCards Identifiers for CDIPTOSP Gene

  • GC16P029987
  • GC16P029960
  • GC16P029962

Summaries for CDIPTOSP Gene

GeneCards Summary for CDIPTOSP Gene

CDIPTOSP (CDIP Transferase Opposite Strand, Pseudogene) is a Pseudogene.

Additional gene information for CDIPTOSP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDIPTOSP Gene

Genomics for CDIPTOSP Gene

GeneHancer (GH) Regulatory Elements for CDIPTOSP Gene

Promoters and enhancers for CDIPTOSP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J029862 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 627.9 -0.7 -692 2.6 HDGF ZNF652 SP1 ZFX CC2D1A ELF3 CTCF SIX5 ZNF148 NKRF CDIPTOSP CDIPT ENSG00000278713 SRCAP SPNS1 ENSG00000260853 INO80E NFATC2IP PRR14 RNF40
GH16J029864 Promoter 0.6 Ensembl 600.7 +1.0 1007 0.4 TEAD3 CDIPT CDIPTOSP ENSG00000278713 PIR40258 GC16M029747
GH16J029898 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 26.1 +36.7 36708 4.6 ZNF473 SP1 ELF3 MNT NKRF MLLT1 ZNF121 AHR TFE3 NCOA6 INO80E ASPHD1 GC16M029899 GC16M029900 SEZ6L2 ZNF785 MIR762HG SRCAP TAOK2 SMG1P5
GH16J029828 Promoter/Enhancer 1.3 EPDnew ENCODE 18.9 -33.6 -33563 3.4 MNT TFE3 SP1 SP5 ZNF384 ZNF644 RFX1 SOX13 PRDM10 GATAD2A MVP CDIPTOSP SH2B1 ENSG00000261766 CDIPT SRCAP C16orf92 TLCD3B DOC2A TMEM219
GH16J029803 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 9.6 -53.1 -53051 14.5 MTA3 SP1 ZNF652 ZFX CTCF CC2D1A ELF3 ZKSCAN8 MNT SIX5 PRRT2 ENSG00000280607 ENSG00000280893 GC16M029811 GC16P029809 MAZ PIR38319 PIR44883 PIR52049 PIR43581
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDIPTOSP on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDIPTOSP Gene

Genomic Locations for CDIPTOSP Gene
chr16:29,863,593-29,868,053
(GRCh38/hg38)
Size:
4,461 bases
Orientation:
Plus strand
chr16:29,874,914-29,879,374
(GRCh37/hg19)
Size:
4,461 bases
Orientation:
Plus strand

Genomic View for CDIPTOSP Gene

Genes around CDIPTOSP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDIPTOSP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDIPTOSP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDIPTOSP Gene

Proteins for CDIPTOSP Gene

  • Protein details for CDIPTOSP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DO92-ENOL_HUMAN
    Recommended name:
    Putative protein T-ENOL
    Protein Accession:
    P0DO92

    Protein attributes for CDIPTOSP Gene

    Size:
    83 amino acids
    Molecular mass:
    9002 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDIPTOSP Gene

Post-translational modifications for CDIPTOSP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDIPTOSP Gene

Domains & Families for CDIPTOSP Gene

Protein Domains for CDIPTOSP Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CDIPTOSP: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDIPTOSP Gene

Function for CDIPTOSP Gene

Phenotypes From GWAS Catalog for CDIPTOSP Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDIPTOSP Gene

Localization for CDIPTOSP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDIPTOSP Gene

Pathways & Interactions for CDIPTOSP Gene

PathCards logo

SuperPathways for CDIPTOSP Gene

No Data Available

Interacting Proteins for CDIPTOSP Gene

Gene Ontology (GO) - Biological Process for CDIPTOSP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDIPTOSP Gene

Drugs & Compounds for CDIPTOSP Gene

No Compound Related Data Available

Transcripts for CDIPTOSP Gene

mRNA/cDNA for CDIPTOSP Gene

(6) Additional mRNA sequences :
(23) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDIPTOSP Gene

No ASD Table

Relevant External Links for CDIPTOSP Gene

GeneLoc Exon Structure for
CDIPTOSP
ECgene alternative splicing isoforms for
CDIPTOSP

Expression for CDIPTOSP Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDIPTOSP Gene

Orthologs for CDIPTOSP Gene

Evolution for CDIPTOSP Gene

ENSEMBL:
Gene Tree for CDIPTOSP (if available)
TreeFam:
Gene Tree for CDIPTOSP (if available)

No data available for Orthologs for CDIPTOSP Gene

Paralogs for CDIPTOSP Gene

No data available for Paralogs for CDIPTOSP Gene

Variants for CDIPTOSP Gene

Sequence variations from dbSNP and Humsavar for CDIPTOSP Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000186798 -- 29,866,385(+) G/A intron_variant
rs1000219324 -- 29,866,670(+) A/T intron_variant
rs1000556536 -- 29,863,854(+) A/G intron_variant, non_coding_transcript_variant
rs1002426899 -- 29,864,478(+) C/T intron_variant
rs1003247056 -- 29,862,917(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CDIPTOSP Gene

Variant ID Type Subtype PubMed ID
esv3638373 CNV loss 21293372
nsv457482 CNV loss 19166990
nsv571818 CNV loss 21841781

Additional Variant Information for CDIPTOSP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDIPTOSP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDIPTOSP Gene

Disorders for CDIPTOSP Gene

No disorders were found for CDIPTOSP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDIPTOSP Gene

Publications for CDIPTOSP Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CDIPTOSP Gene

Sources for CDIPTOSP Gene

Content
Loading form....