CDIPTOSP Gene (RNA Gene)

CDIP Transferase Opposite Strand, Pseudogene

GC16P030099
GIFtS:
14
See more...

Aliases for CDIPTOSP Gene

Subcategory (RNA class) for CDIPTOSP Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CDIPTOSP Gene

  • CDIP Transferase Opposite Strand, Pseudogene 2 3 4 5
  • CDIPT Antisense RNA 1 (Head To Head) 2 3
  • CDIPT-AS1 3 4
  • Putative Protein T-ENOL 4
  • CDIPT Antisense RNA 1 4
  • NONHSAG019057.2 91
  • CTD-2574D22.5 3
  • HSALNG0110650 164
  • Lnc-MVP-3 165
  • CDIPTOSP 5
  • T-ENOL 4

External Ids for CDIPTOSP Gene

Previous HGNC Symbols for CDIPTOSP Gene

  • CDIPT-AS1

Previous GeneCards Identifiers for CDIPTOSP Gene

  • GC16P029987
  • GC16P030003
  • GC16P030018
  • GC16P030057
  • GC16P029960
  • GC16P029962

Summaries for CDIPTOSP Gene

GeneCards Summary for CDIPTOSP Gene

CDIPTOSP (CDIP Transferase Opposite Strand, Pseudogene) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CDIPTOSP include Central Nervous System Germ Cell Tumor and Brain Germinoma.

Additional gene information for CDIPTOSP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CDIPTOSP Gene

Genomics for CDIPTOSP Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CDIPTOSP Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDIPTOSP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CDIPTOSP Gene

Genomic Locations for CDIPTOSP Gene
chr16:29,863,551-29,868,779
(GRCh38/hg38)
Size:
5,229 bases
Orientation:
Plus strand
chr16:29,874,914-29,879,374
(GRCh37/hg19)
Size:
4,461 bases
Orientation:
Plus strand

Genomic View for CDIPTOSP Gene

Genes around CDIPTOSP on UCSC Golden Path with GeneCards custom track
CDIPTOSP in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CDIPTOSP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDIPTOSP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CDIPTOSP Gene

Proteins for CDIPTOSP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CDIPTOSP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DO92-ENOL_HUMAN
    Recommended name:
    Putative protein T-ENOL
    Protein Accession:
    P0DO92

    Protein attributes for CDIPTOSP Gene

    Size:
    83 amino acids
    Molecular mass:
    9002 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDIPTOSP Gene

Post-translational modifications for CDIPTOSP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDIPTOSP Gene

Domains & Families for CDIPTOSP Gene

Protein Domains for CDIPTOSP Gene

ProtoNet:
genes like me logo Genes that share domains with CDIPTOSP: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CDIPTOSP Gene

Function for CDIPTOSP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CDIPTOSP Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDIPTOSP Gene

Localization for CDIPTOSP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDIPTOSP Gene

Pathways & Interactions for CDIPTOSP Gene

PathCards logo

SuperPathways for CDIPTOSP Gene

No Data Available

Gene Ontology (GO) - Biological Process for CDIPTOSP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CDIPTOSP Gene

Drugs & Compounds for CDIPTOSP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CDIPTOSP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CDIPTOSP Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B86B_9606 lncRNA 762 1

RefSeq: NR_015396,

URS000075B5C9_9606 lncRNA 639 1

RefSeq: NR_024370,

URS00008B7AE4_9606 lncRNA 762 3

LncBook: HSALNT0229596,

LNCipedia: lnc-MVP-3:15,

NONCODE: NONHSAT141661.2,

URS00008B7F2D_9606 lncRNA 705 3

LncBook: HSALNT0229598,

LNCipedia: lnc-MVP-3:16,

NONCODE: NONHSAT141662.2,

URS00008BC416_9606 lncRNA 571 3

LncBook: HSALNT0229603,

LNCipedia: lnc-MVP-3:21,

NONCODE: NONHSAT141663.2,

CDIPTOSP in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CDIPTOSP Gene

6 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDIPTOSP Gene

No ASD Table

Relevant External Links for CDIPTOSP Gene

GeneLoc Exon Structure for
CDIPTOSP

Expression for CDIPTOSP Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CDIPTOSP

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDIPTOSP Gene

Orthologs for CDIPTOSP Gene

Evolution for CDIPTOSP Gene

ENSEMBL:
Gene Tree for CDIPTOSP (if available)
TreeFam:
Gene Tree for CDIPTOSP (if available)

No data available for Orthologs for CDIPTOSP Gene

Paralogs for CDIPTOSP Gene

No data available for Paralogs for CDIPTOSP Gene

Variants for CDIPTOSP Gene

Additional dbSNP identifiers (rs#s) for CDIPTOSP Gene

Structural Variations from Database of Genomic Variants (DGV) for CDIPTOSP Gene

Variant ID Type Subtype PubMed ID
esv3638373 CNV loss 21293372
nsv457482 CNV loss 19166990
nsv571818 CNV loss 21841781

Additional Variant Information for CDIPTOSP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDIPTOSP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CDIPTOSP Gene

Disorders for CDIPTOSP Gene

MalaCards: The human disease database

(2) MalaCards diseases for CDIPTOSP Gene - From: DISEASES

Disorder Aliases PubMed IDs
central nervous system germ cell tumor
  • central nervous system germ cell tumour
brain germinoma
  • germinoma of the brain
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CDIPTOSP

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with CDIPTOSP: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CDIPTOSP Gene

Publications for CDIPTOSP Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for CDIPTOSP gene in Mastermind

Products for CDIPTOSP Gene

Sources for CDIPTOSP Gene