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CDIPTOSP Gene(Pseudogene)

CDIP Transferase Opposite Strand, Pseudogene

GCID:
GC16P029960
GIFtS:
11
Genes Participants
UDN Logo

Aliases for CDIPTOSP Gene

Aliases for CDIPTOSP Gene

  • CDIP Transferase Opposite Strand, Pseudogene 2 3
  • CDIPT Antisense RNA 1 (Head To Head) 2 3 5
  • CDIPT-AS1 3 5
  • CTD-2574D22.5 3

External Ids for CDIPTOSP Gene

Previous HGNC Symbols for CDIPTOSP Gene

  • CDIPT-AS1

Summaries for CDIPTOSP Gene

GeneCards Summary for CDIPTOSP Gene

CDIPTOSP (CDIP Transferase Opposite Strand, Pseudogene) is a Pseudogene.

Additional gene information for CDIPTOSP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDIPTOSP Gene

Genomics for CDIPTOSP Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for CDIPTOSP Gene

Promoters and enhancers for CDIPTOSP Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J029862 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 678 -0.5 -471 2.1 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC CDIPTOSP CDIPT ENSG00000278713 SRCAP INO80E SPNS1 ENSG00000260853 NFATC2IP RNF40 SMG1P2
GH16J029898 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 26.1 +37.0 36955 3.8 PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 INO80E ASPHD1 GC16M029899 GC16M029900 SEZ6L2 SMG1P5 SMG1P2 SRCAP ZNF785 ENSG00000260853
GH16J029828 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 18.9 -33.6 -33563 3.4 FOXA2 MLX ARID4B DMAP1 ETS1 YY1 SLC30A9 RXRA SP5 REST MVP CDIPTOSP CDIPT C16orf92 FAM57B DOC2A TMEM219 HIRIP3 INO80E C16orf54
GH16J029819 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.4 -40.7 -40679 7.5 HDGF PKNOX1 CLOCK SIN3A ZNF48 YY1 GLIS2 ZNF143 ZFP91 FOS MVP ENSG00000238045 GC16M029840 INO80E ATXN2L SRCAP FBRS ENSG00000260853 RNF40 NPIPB12
GH16J029813 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.6 -48.0 -47968 4 CLOCK FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ENSG00000281348 PAGR1 PRRT2 SRCAP SMG1P2 ENSG00000260853 SMG1P5 NFATC2IP SPNS1 INO80E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDIPTOSP on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDIPTOSP Gene

Genomic Locations for CDIPTOSP Gene
chr16:29,863,593-29,868,053
(GRCh38/hg38)
Size:
4,461 bases
Orientation:
Plus strand
chr16:29,874,914-29,879,374
(GRCh37/hg19)
Size:
4,461 bases
Orientation:
Plus strand

Genomic View for CDIPTOSP Gene

Genes around CDIPTOSP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDIPTOSP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDIPTOSP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CDIPTOSP Gene

Proteins for CDIPTOSP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CDIPTOSP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDIPTOSP Gene

Domains & Families for CDIPTOSP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDIPTOSP Gene

Function for CDIPTOSP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CDIPTOSP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDIPTOSP Gene

Localization for CDIPTOSP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDIPTOSP Gene

Pathways & Interactions for CDIPTOSP Gene

SuperPathways for CDIPTOSP Gene

PathCards logo More details on SuperPathways for CDIPTOSP
No Data Available

Interacting Proteins for CDIPTOSP Gene

Gene Ontology (GO) - Biological Process for CDIPTOSP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDIPTOSP Gene

Drugs & Compounds for CDIPTOSP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CDIPTOSP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CDIPTOSP Gene

(23) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CDIPTOSP Gene

No ASD Table

Relevant External Links for CDIPTOSP Gene

GeneLoc Exon Structure for
CDIPTOSP
ECgene alternative splicing isoforms for
CDIPTOSP

Expression for CDIPTOSP Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDIPTOSP Gene

Orthologs for CDIPTOSP Gene

Evolution for CDIPTOSP Gene

ENSEMBL:
Gene Tree for CDIPTOSP (if available)
TreeFam:
Gene Tree for CDIPTOSP (if available)

No data available for Orthologs for CDIPTOSP Gene

Paralogs for CDIPTOSP Gene

No data available for Paralogs for CDIPTOSP Gene

Variants for CDIPTOSP Gene

Sequence variations from dbSNP and Humsavar for CDIPTOSP Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000186798 -- 29,866,385(+) G/A intron_variant
rs1000219324 -- 29,866,670(+) A/T intron_variant
rs1000556536 -- 29,863,854(+) A/G intron_variant, non_coding_transcript_variant
rs1002426899 -- 29,864,478(+) C/T intron_variant
rs1003247056 -- 29,862,917(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CDIPTOSP Gene

Variant ID Type Subtype PubMed ID
esv3638373 CNV loss 21293372
nsv457482 CNV loss 19166990
nsv571818 CNV loss 21841781

Additional Variant Information for CDIPTOSP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDIPTOSP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDIPTOSP Gene

Disorders for CDIPTOSP Gene

Additional Disease Information for CDIPTOSP

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for CDIPTOSP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDIPTOSP Gene

Publications for CDIPTOSP Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CDIPTOSP Gene

Sources for CDIPTOSP Gene

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