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Aliases for CDIPT-AS1 Gene

Subcategory (RNA class) for CDIPT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDIPT-AS1 Gene

  • CDIPT Antisense RNA 1 (Head To Head) 2 3 5
  • CDIPT Antisense RNA 1 4
  • CTD-2574D22.5 3
  • T-ENOL 4

External Ids for CDIPT-AS1 Gene

Previous GeneCards Identifiers for CDIPT-AS1 Gene

  • GC16P029874
  • GC16P029877
  • GC16P029887
  • GC16P029897
  • GC16P029906
  • GC16P029921

Summaries for CDIPT-AS1 Gene

GeneCards Summary for CDIPT-AS1 Gene

CDIPT-AS1 (CDIPT Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CDIPT-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDIPT-AS1 Gene

Genomics for CDIPT-AS1 Gene

GeneHancer (GH) Regulatory Elements for CDIPT-AS1 Gene

Promoters and enhancers for CDIPT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I029862 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 578 -0.5 -471 2.1 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC CDIPT-AS1 CDIPT ENSG00000278713 SRCAP SPNS1 INO80E ENSG00000260853 NFATC2IP PRR14 ENSG00000260367
GH16I029861 Promoter 0.8 EPDnew 550.8 -2.0 -1966 0.1 SCRT1 SCRT2 CEBPB MAX REST YY1 CDIPT CDIPT-AS1 ENSG00000278713 DOC2A TMEM219 PIR53083 GC16M029747
GH16I029898 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 26.1 +37.0 36955 3.8 PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 ASPHD1 GC16M029899 GC16M029900 SEZ6L2 ZNF785 ENSG00000260114 SMG1P5 SMG1P2 SRCAP MIR762HG
GH16I029819 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.4 -40.7 -40679 7.5 HDGF PKNOX1 CLOCK SIN3A ZNF48 YY1 GLIS2 ZNF143 FOS RUNX3 MVP GC16M029840 ENSG00000238045 INO80E SRCAP ENSG00000260853 NPIPB12 GDPD3 ATXN2L NFATC2IP
GH16I029813 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.6 -48.0 -47968 4 CLOCK FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ENSG00000281348 PAGR1 SRCAP SMG1P5 SMG1P2 ENSG00000260853 NFATC2IP ENSG00000261766 ATXN2L ZNF764
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CDIPT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDIPT-AS1 Gene

Genomic Locations for CDIPT-AS1 Gene
chr16:29,863,593-29,868,053
(GRCh38/hg38)
Size:
4,461 bases
Orientation:
Plus strand
chr16:29,874,914-29,879,374
(GRCh37/hg19)

Genomic View for CDIPT-AS1 Gene

Genes around CDIPT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDIPT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDIPT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDIPT-AS1 Gene

Proteins for CDIPT-AS1 Gene

  • Protein details for CDIPT-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DO92-ENOL_HUMAN
    Recommended name:
    Putative protein T-ENOL
    Protein Accession:
    P0DO92

    Protein attributes for CDIPT-AS1 Gene

    Size:
    83 amino acids
    Molecular mass:
    9002 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDIPT-AS1 Gene

Post-translational modifications for CDIPT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDIPT-AS1 Gene

Domains & Families for CDIPT-AS1 Gene

Protein Domains for CDIPT-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CDIPT-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDIPT-AS1 Gene

Function for CDIPT-AS1 Gene

Phenotypes From GWAS Catalog for CDIPT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDIPT-AS1 Gene

Localization for CDIPT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDIPT-AS1 Gene

Pathways & Interactions for CDIPT-AS1 Gene

SuperPathways for CDIPT-AS1 Gene

No Data Available

Interacting Proteins for CDIPT-AS1 Gene

Selected Interacting proteins: P0DO92-ENOL_HUMAN for CDIPT-AS1 Gene via UniProtKB

Symbol External ID(s) Details
PRKAR1A

Gene Ontology (GO) - Biological Process for CDIPT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDIPT-AS1 Gene

Drugs & Compounds for CDIPT-AS1 Gene

No Compound Related Data Available

Transcripts for CDIPT-AS1 Gene

mRNA/cDNA for CDIPT-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CDIPT-AS1 Gene

No ASD Table

Relevant External Links for CDIPT-AS1 Gene

GeneLoc Exon Structure for
CDIPT-AS1
ECgene alternative splicing isoforms for
CDIPT-AS1

Expression for CDIPT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDIPT-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDIPT-AS1 Gene

This gene is overexpressed in Testis (x41.1).
genes like me logo Genes that share expression patterns with CDIPT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDIPT-AS1 Gene

Orthologs for CDIPT-AS1 Gene

Evolution for CDIPT-AS1 Gene

ENSEMBL:
Gene Tree for CDIPT-AS1 (if available)
TreeFam:
Gene Tree for CDIPT-AS1 (if available)

No data available for Orthologs for CDIPT-AS1 Gene

Paralogs for CDIPT-AS1 Gene

No data available for Paralogs for CDIPT-AS1 Gene

Variants for CDIPT-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDIPT-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000186798 -- 29,866,385(+) G/A intron_variant
rs1000219324 -- 29,866,670(+) A/T intron_variant
rs1000556536 -- 29,863,854(+) A/G intron_variant, non_coding_transcript_variant
rs1002426899 -- 29,864,478(+) C/T intron_variant
rs1003247056 -- 29,862,917(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CDIPT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3638373 CNV loss 21293372
nsv457482 CNV loss 19166990
nsv571818 CNV loss 21841781

Additional Variant Information for CDIPT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDIPT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDIPT-AS1 Gene

Disorders for CDIPT-AS1 Gene

Additional Disease Information for CDIPT-AS1

No disorders were found for CDIPT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDIPT-AS1 Gene

Publications for CDIPT-AS1 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CDIPT-AS1 Gene

Sources for CDIPT-AS1 Gene

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