Aliases for CDH23-AS1 Gene

Subcategory (RNA class) for CDH23-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CDH23-AS1 Gene

  • CDH23 Antisense RNA 1 2 3 5
  • CDH23 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CDH23-AS1 2 168
  • Chromosome 10 Open Reading Frame 106 2
  • Non-Protein Coding RNA 223 2
  • HSALNG0078712 167
  • NONHSAG006160 92
  • NCRNA00223 3
  • BA327E2.3 3
  • C10orf106 3

External Ids for CDH23-AS1 Gene

Previous HGNC Symbols for CDH23-AS1 Gene

  • C10orf106
  • NCRNA00223

Previous GeneCards Identifiers for CDH23-AS1 Gene

  • GC10U901556
  • GC10M073269

Summaries for CDH23-AS1 Gene

GeneCards Summary for CDH23-AS1 Gene

CDH23-AS1 (CDH23 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CDH23-AS1 include Usher Syndrome, Type Id and Usher Syndrome.

Additional gene information for CDH23-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CDH23-AS1 Gene

Genomics for CDH23-AS1 Gene

GeneHancer (GH) Regulatory Elements for CDH23-AS1 Gene

Promoters and enhancers for CDH23-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J071513 Enhancer 0.8 Ensembl ENCODE 508.6 -1.4 -1381 2.2 MXI1 NFIC ZNF707 MYC PKNOX1 DPF2 ZNF217 NFIB GLIS1 ZMYM3 CDH23-AS1 CDH23 RF00017-691
GH10J071258 Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 +244.2 244219 17.8 CTCF ZSCAN5C POLR2G GTF2E2 JUND FOS ZNF639 ZNF10 ZIC2 ZBTB10 UNC5B UNC5B-AS1 SLC29A3 CDH23-AS1 CDH23 PCBD1 piR-41736 piR-36302
GH10J071632 Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 10.9 -124.7 -124658 7.5 EP300 NRF1 POLR2G NCOR1 GTF2E2 PHB2 ZBTB5 ZIC2 KDM6A ZNF263 CDH23 SLC29A3 CDH23-AS1 VSIR PSAP SGPL1 piR-57460-061 AB372778-006
GH10J071486 Enhancer 0.8 Ensembl ENCODE 18.9 +24.5 24519 2 CTCF ZIC2 GABPA REST RAD21 TRIM22 SMC3 ZNF654 MAZ SIN3A CDH23-AS1 CDH23 lnc-C10orf105-6 LOC105378356
GH10J071647 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.8 -136.9 -136902 3.2 CTCF TEAD4 ZIC2 ZNF263 GABPA REST MYC CTBP1 SMC3 RBM25 VSIR CDH23-AS1 SLC29A3 PSAP piR-57460-061 lnc-C10orf105-3 CDH23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDH23-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDH23-AS1 Gene

Genomic Locations for CDH23-AS1 Gene
chr10:71,508,153-71,511,920
(GRCh38/hg38)
Size:
3,768 bases
Orientation:
Minus strand
chr10:73,267,910-73,271,630
(GRCh37/hg19)
Size:
3,721 bases
Orientation:
Minus strand

Genomic View for CDH23-AS1 Gene

Genes around CDH23-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDH23-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDH23-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDH23-AS1 Gene

Proteins for CDH23-AS1 Gene

Post-translational modifications for CDH23-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDH23-AS1 Gene

Domains & Families for CDH23-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CDH23-AS1 Gene

Function for CDH23-AS1 Gene

Phenotypes From GWAS Catalog for CDH23-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDH23-AS1 Gene

Localization for CDH23-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDH23-AS1 Gene

Pathways & Interactions for CDH23-AS1 Gene

PathCards logo

SuperPathways for CDH23-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CDH23-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CDH23-AS1 Gene

Drugs & Compounds for CDH23-AS1 Gene

No Compound Related Data Available

Transcripts for CDH23-AS1 Gene

mRNA/cDNA for CDH23-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDH23-AS1 Gene

No ASD Table

Relevant External Links for CDH23-AS1 Gene

GeneLoc Exon Structure for
CDH23-AS1

Expression for CDH23-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CDH23-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDH23-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with CDH23-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDH23-AS1 Gene

Orthologs for CDH23-AS1 Gene

Evolution for CDH23-AS1 Gene

ENSEMBL:
Gene Tree for CDH23-AS1 (if available)
TreeFam:
Gene Tree for CDH23-AS1 (if available)

No data available for Orthologs for CDH23-AS1 Gene

Paralogs for CDH23-AS1 Gene

No data available for Paralogs for CDH23-AS1 Gene

Variants for CDH23-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CDH23-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
678765 Benign: not provided 71,509,957(-) T/C NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
rs1057520661 Pathogenic: not provided 71,510,225(-) G/C SPLICE_DONOR_VARIANT
rs1064794990 Uncertain Significance: not provided 71,510,204(-) C/T MISSENSE_VARIANT
rs111033288 Conflicting Interpretations: Retinitis pigmentosa-deafness syndrome; not specified; Nonsyndromic Hearing Loss, Recessive 71,510,134(-) G/A SYNONYMOUS_VARIANT
rs116624130 Conflicting Interpretations: Retinitis pigmentosa-deafness syndrome; not specified; Nonsyndromic Hearing Loss, Recessive 71,510,140(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for CDH23-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CDH23-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759766 CNV loss 17122850
nsv1044971 CNV gain 25217958
nsv523021 CNV gain 19592680
nsv551502 CNV gain 21841781

Additional Variant Information for CDH23-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDH23-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDH23-AS1 Gene

Disorders for CDH23-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for CDH23-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
usher syndrome, type id
  • ush1d
usher syndrome
  • retinitis pigmentosa-deafness syndrome
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CDH23-AS1

genes like me logo Genes that share disorders with CDH23-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CDH23-AS1 Gene

Publications for CDH23-AS1 Gene

No publications were found for CDH23-AS1 Gene.

Products for CDH23-AS1 Gene

Sources for CDH23-AS1 Gene