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Aliases for CDH23-AS1 Gene

Subcategory (RNA class) for CDH23-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CDH23-AS1 Gene

  • CDH23 Antisense RNA 1 2 3 5
  • CDH23 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 10 Open Reading Frame 106 2
  • Non-Protein Coding RNA 223 2
  • NCRNA00223 3
  • BA327E2.3 3
  • C10orf106 3

External Ids for CDH23-AS1 Gene

Previous HGNC Symbols for CDH23-AS1 Gene

  • C10orf106
  • NCRNA00223

Previous GeneCards Identifiers for CDH23-AS1 Gene

  • GC10U901556
  • GC10M073269

Summaries for CDH23-AS1 Gene

GeneCards Summary for CDH23-AS1 Gene

CDH23-AS1 (CDH23 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CDH23-AS1 include Retinitis Pigmentosa.

Additional gene information for CDH23-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDH23-AS1 Gene

Genomics for CDH23-AS1 Gene

GeneHancer (GH) Regulatory Elements for CDH23-AS1 Gene

Promoters and enhancers for CDH23-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J071513 Enhancer 0.5 ENCODE 658.6 -1.3 -1303 0.2 ZNF217 GATA3 DPF2 MNT CDH23-AS1 LOC105378355 CDH23
GH10J072270 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 14.6 -762.8 -762847 8.5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 DDIT4 DDIT4-AS1 ECD DNAJB12 ENSG00000227540 FAM149B1 DNAJC9 RPL17P50 ENSG00000272630 ASCC1
GH10J072352 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.6 -842.3 -842320 3 CLOCK FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 MEF2D DNAJB12 ECD ENSG00000227540 HMGN2P34 CDH23-AS1 DNAJC9 ENSG00000272599 CHST3 EIF4A2P2 NPM1P24
GH10J072326 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 -820.3 -820327 11.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 ZNF143 SP3 NFYC MEF2D DNAJB12 ECD ENSG00000227540 HMGN2P34 CDH23-AS1 DNAJC9 RPL17P50 ENSG00000272599 DDIT4 PSAP
GH10J071631 Enhancer 0.8 ENCODE 25 -119.8 -119783 0.7 BCOR TEAD4 KLF17 FEZF1 NFXL1 ZIC2 ZNF121 CTBP1 ZBTB48 PATZ1 CDH23-AS1 LOC105378349 DNAJB12 SLC29A3 GC10P071695 LOC105378355 CDH23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CDH23-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDH23-AS1 Gene

Genomic Locations for CDH23-AS1 Gene
chr10:71,508,153-71,511,920
(GRCh38/hg38)
Size:
3,768 bases
Orientation:
Minus strand
chr10:73,267,910-73,271,630
(GRCh37/hg19)
Size:
3,721 bases
Orientation:
Minus strand

Genomic View for CDH23-AS1 Gene

Genes around CDH23-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDH23-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDH23-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDH23-AS1 Gene

Proteins for CDH23-AS1 Gene

Post-translational modifications for CDH23-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDH23-AS1 Gene

Domains & Families for CDH23-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDH23-AS1 Gene

Function for CDH23-AS1 Gene

Phenotypes From GWAS Catalog for CDH23-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDH23-AS1 Gene

Localization for CDH23-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDH23-AS1 Gene

Pathways & Interactions for CDH23-AS1 Gene

SuperPathways for CDH23-AS1 Gene

No Data Available

Interacting Proteins for CDH23-AS1 Gene

Gene Ontology (GO) - Biological Process for CDH23-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDH23-AS1 Gene

Drugs & Compounds for CDH23-AS1 Gene

No Compound Related Data Available

Transcripts for CDH23-AS1 Gene

mRNA/cDNA for CDH23-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDH23-AS1 Gene

No ASD Table

Relevant External Links for CDH23-AS1 Gene

GeneLoc Exon Structure for
CDH23-AS1
ECgene alternative splicing isoforms for
CDH23-AS1

Expression for CDH23-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDH23-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDH23-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with CDH23-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDH23-AS1 Gene

Orthologs for CDH23-AS1 Gene

Evolution for CDH23-AS1 Gene

ENSEMBL:
Gene Tree for CDH23-AS1 (if available)
TreeFam:
Gene Tree for CDH23-AS1 (if available)

No data available for Orthologs for CDH23-AS1 Gene

Paralogs for CDH23-AS1 Gene

No data available for Paralogs for CDH23-AS1 Gene

Variants for CDH23-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDH23-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs111033288 benign, uncertain-significance, not specified, Retinitis pigmentosa-deafness syndrome, Nonsyndromic Hearing Loss, Recessive 71,510,134(-) G/A intron_variant
rs116624130 benign, uncertain-significance, not specified, Nonsyndromic Hearing Loss, Recessive, Retinitis pigmentosa-deafness syndrome 71,510,140(-) C/T intron_variant
rs183046743 uncertain-significance, Retinitis pigmentosa-deafness syndrome, Nonsyndromic Hearing Loss, Recessive 71,511,169(-) C/T intron_variant
rs3802719 benign, likely-benign, not specified, Retinitis pigmentosa-deafness syndrome, Nonsyndromic Hearing Loss, Recessive 71,511,225(-) G/A intron_variant
rs3802720 benign, likely-benign, not specified, Retinitis pigmentosa-deafness syndrome, Nonsyndromic Hearing Loss, Recessive 71,511,149(-) T/C intron_variant

Additional Variant Information for CDH23-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDH23-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDH23-AS1 Gene

Disorders for CDH23-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CDH23-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CDH23-AS1

genes like me logo Genes that share disorders with CDH23-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CDH23-AS1 Gene

Publications for CDH23-AS1 Gene

No publications were found for CDH23-AS1 Gene.

Products for CDH23-AS1 Gene

Sources for CDH23-AS1 Gene

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