Aliases for CDH23-AS1 Gene

Subcategory (RNA class) for CDH23-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CDH23-AS1 Gene

  • CDH23 Antisense RNA 1 2 3 5
  • CDH23-AS1 2 5 165
  • CDH23 Antisense RNA 1 (Non-Protein Coding) 2 3
  • BA327E2.3 2 3
  • Chromosome 10 Open Reading Frame 106 2
  • Non-Protein Coding RNA 223 2
  • NONHSAG006160.2 91
  • HSALNG0078712 164
  • NCRNA00223 3
  • C10orf106 3

External Ids for CDH23-AS1 Gene

Previous HGNC Symbols for CDH23-AS1 Gene

  • C10orf106
  • NCRNA00223

Previous GeneCards Identifiers for CDH23-AS1 Gene

  • GC10U901556
  • GC10M073269

Summaries for CDH23-AS1 Gene

GeneCards Summary for CDH23-AS1 Gene

CDH23-AS1 (CDH23 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CDH23-AS1 include Deafness, Autosomal Recessive 12 and Usher Syndrome, Type Id.

Additional gene information for CDH23-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CDH23-AS1 Gene

Genomics for CDH23-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CDH23-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CDH23-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CDH23-AS1 Gene

Genomic Locations for CDH23-AS1 Gene
chr10:71,508,153-71,511,920
(GRCh38/hg38)
Size:
3,768 bases
Orientation:
Minus strand
chr10:73,267,910-73,271,630
(GRCh37/hg19)
Size:
3,721 bases
Orientation:
Minus strand

Genomic View for CDH23-AS1 Gene

Genes around CDH23-AS1 on UCSC Golden Path with GeneCards custom track
CDH23-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CDH23-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDH23-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDH23-AS1 Gene

Proteins for CDH23-AS1 Gene

Post-translational modifications for CDH23-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDH23-AS1 Gene

Domains & Families for CDH23-AS1 Gene

Gene Families for CDH23-AS1 Gene

genes like me logo Genes that share domains with CDH23-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CDH23-AS1 Gene

Function for CDH23-AS1 Gene

Phenotypes From GWAS Catalog for CDH23-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDH23-AS1 Gene

Localization for CDH23-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDH23-AS1 Gene

Pathways & Interactions for CDH23-AS1 Gene

PathCards logo

SuperPathways for CDH23-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CDH23-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CDH23-AS1 Gene

Drugs & Compounds for CDH23-AS1 Gene

No Compound Related Data Available

Transcripts for CDH23-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CDH23-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E11A_9606 lncRNA 425 4

HGNC: 31433,

RefSeq: NR_120672,

LncBook: HSALNT0164143,

LNCipedia: CDH23-AS1:1,

URS0000352971_9606 lncRNA 378 4

Ensembl: ENST00000428918 (view in UCSC) ,

LncBook: HSALNT0164144,

LNCipedia: CDH23-AS1:2,

NONCODE: NONHSAT013898.2,

URS00009B89F9_9606 lncRNA 378 2

LncBook: HSALNT0164142,

NONCODE: NONHSAT157132.1,

CDH23-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CDH23-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDH23-AS1 Gene

No ASD Table

Relevant External Links for CDH23-AS1 Gene

GeneLoc Exon Structure for
CDH23-AS1

Expression for CDH23-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CDH23-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDH23-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with CDH23-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDH23-AS1 Gene

Orthologs for CDH23-AS1 Gene

Evolution for CDH23-AS1 Gene

ENSEMBL:
Gene Tree for CDH23-AS1 (if available)
TreeFam:
Gene Tree for CDH23-AS1 (if available)

No data available for Orthologs for CDH23-AS1 Gene

Paralogs for CDH23-AS1 Gene

No data available for Paralogs for CDH23-AS1 Gene

Variants for CDH23-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CDH23-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
678765 Benign: not provided 71,509,957(-) T/C NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
740994 Likely Benign: not provided 71,511,170(-) G/A SYNONYMOUS_VARIANT
747502 Conflicting Interpretations: Usher syndrome type 1D; Deafness, autosomal recessive 12; not provided 71,510,989(-) C/T SYNONYMOUS_VARIANT
755119 Likely Benign: not provided 71,510,992(-) C/T SYNONYMOUS_VARIANT
763791 Likely Benign: not provided 71,510,971(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for CDH23-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CDH23-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759766 CNV loss 17122850
nsv1044971 CNV gain 25217958
nsv523021 CNV gain 19592680
nsv551502 CNV gain 21841781

Additional Variant Information for CDH23-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDH23-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDH23-AS1 Gene

Disorders for CDH23-AS1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for CDH23-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
deafness, autosomal recessive 12
  • dfnb12
usher syndrome, type id
  • ush1d
usher syndrome
  • retinitis pigmentosa-deafness syndrome
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CDH23-AS1

genes like me logo Genes that share disorders with CDH23-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CDH23-AS1 Gene

Publications for CDH23-AS1 Gene

No publications were found for CDH23-AS1 Gene.

Products for CDH23-AS1 Gene

Sources for CDH23-AS1 Gene