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Aliases for CDH18-AS1 Gene

Subcategory (RNA class) for CDH18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CDH18-AS1 Gene

  • CDH18 Antisense RNA 1 2 3 5

External Ids for CDH18-AS1 Gene

Summaries for CDH18-AS1 Gene

GeneCards Summary for CDH18-AS1 Gene

CDH18-AS1 (CDH18 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CDH18-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDH18-AS1 Gene

Genomics for CDH18-AS1 Gene

GeneHancer (GH) Regulatory Elements for CDH18-AS1 Gene

Promoters and enhancers for CDH18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J020275 Enhancer 0.8 Ensembl ENCODE 0.3 -29.0 -29001 1.7 SREBF2 BACH1 SIN3A MAFG EP300 SP1 JUND MAFF POLR2A NFE2 GC05P020274 CDH18-AS1 CDH18
GH05J020286 Enhancer 0.5 ENCODE 0.4 -18.8 -18804 0.2 USF2 MAFG NFE2 FOSL2 MAFK NFE2L2 GC05P020274 CDH18-AS1 CDH18
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CDH18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDH18-AS1 Gene

Genomic Locations for CDH18-AS1 Gene
chr5:20,305,551-20,332,446
(GRCh38/hg38)
Size:
26,896 bases
Orientation:
Plus strand
chr5:20,305,674-20,331,565
(GRCh37/hg19)

Genomic View for CDH18-AS1 Gene

Genes around CDH18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDH18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDH18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDH18-AS1 Gene

Proteins for CDH18-AS1 Gene

Post-translational modifications for CDH18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDH18-AS1 Gene

Domains & Families for CDH18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDH18-AS1 Gene

Function for CDH18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDH18-AS1 Gene

Localization for CDH18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDH18-AS1 Gene

Pathways & Interactions for CDH18-AS1 Gene

SuperPathways for CDH18-AS1 Gene

No Data Available

Interacting Proteins for CDH18-AS1 Gene

Gene Ontology (GO) - Biological Process for CDH18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDH18-AS1 Gene

Drugs & Compounds for CDH18-AS1 Gene

No Compound Related Data Available

Transcripts for CDH18-AS1 Gene

mRNA/cDNA for CDH18-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDH18-AS1 Gene

No ASD Table

Relevant External Links for CDH18-AS1 Gene

GeneLoc Exon Structure for
CDH18-AS1
ECgene alternative splicing isoforms for
CDH18-AS1

Expression for CDH18-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDH18-AS1 Gene

Orthologs for CDH18-AS1 Gene

Evolution for CDH18-AS1 Gene

ENSEMBL:
Gene Tree for CDH18-AS1 (if available)
TreeFam:
Gene Tree for CDH18-AS1 (if available)

No data available for Orthologs for CDH18-AS1 Gene

Paralogs for CDH18-AS1 Gene

No data available for Paralogs for CDH18-AS1 Gene

Variants for CDH18-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDH18-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000003094 -- 20,318,340(+) C/T intron_variant
rs1000023290 -- 20,322,646(+) T/G intron_variant
rs1000176500 -- 20,327,401(+) T/G intron_variant
rs1000233967 -- 20,318,998(+) C/G intron_variant
rs1000243782 -- 20,318,724(+) G/A intron_variant

Additional Variant Information for CDH18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDH18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDH18-AS1 Gene

Disorders for CDH18-AS1 Gene

Additional Disease Information for CDH18-AS1

No disorders were found for CDH18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDH18-AS1 Gene

Publications for CDH18-AS1 Gene

No publications were found for CDH18-AS1 Gene.

Products for CDH18-AS1 Gene

Sources for CDH18-AS1 Gene

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