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Aliases for CDC42-IT1 Gene

Subcategory (RNA class) for CDC42-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CDC42-IT1 Gene

  • CDC42 Intronic Transcript 1 2 3 5
  • CDC42 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for CDC42-IT1 Gene

Previous GeneCards Identifiers for CDC42-IT1 Gene

  • GC00U933660
  • GC01P022386

Summaries for CDC42-IT1 Gene

GeneCards Summary for CDC42-IT1 Gene

CDC42-IT1 (CDC42 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CDC42-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDC42-IT1 Gene

Genomics for CDC42-IT1 Gene

GeneHancer (GH) Regulatory Elements for CDC42-IT1 Gene

Promoters and enhancers for CDC42-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J021779 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 52.4 -276.7 -276663 6.2 MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D USP48 ZBTB40 CDC42-IT1 HP1BP3 ENSG00000271428 NBPF3 CDC42 EIF4G3 NBPF2P ZBTB40-IT1
GH01J022023 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 52.2 -33.5 -33459 3.8 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 MEF2D LINC00339 LINC01635 ZBTB40 CDC42-IT1 KDM1A USP48 ENSG00000271428 NBPF3 HSPG2 CDC42
GH01J022051 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 38 -5.9 -5890 3.1 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 SP3 NFYC MEF2D ZNF610 CDC42 ZBTB40 KDM1A USP48 LINC00339 CDC42-IT1 NBPF3 ENSG00000271428 NBPF2P LINC01635
GH01J021893 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 31.7 -153.9 -153903 22.6 HDGF HNRNPUL1 PKNOX1 SMAD1 MLX ARNT ZFP64 POLR2B ZNF766 CBX5 ZBTB40 USP48 CDC42-IT1 HSPG2 LDLRAD2 ENSG00000271428 NBPF3 EPHB2 RPL21P29 GC01M021883
GH01J022450 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20 +392.6 392634 3.3 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 ZBTB40 PIR59957 USP48 CDC42-IT1 KDM1A LINC01355 HNRNPR ENSG00000271428 WNT4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CDC42-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CDC42-IT1 Gene

Genomic Locations for CDC42-IT1 Gene
chr1:22,059,197-22,064,199
(GRCh38/hg38)
Size:
5,003 bases
Orientation:
Plus strand
chr1:22,385,690-22,390,692
(GRCh37/hg19)

Genomic View for CDC42-IT1 Gene

Genes around CDC42-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDC42-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDC42-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CDC42-IT1 Gene

Proteins for CDC42-IT1 Gene

Post-translational modifications for CDC42-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDC42-IT1 Gene

Domains & Families for CDC42-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDC42-IT1 Gene

Function for CDC42-IT1 Gene

Phenotypes From GWAS Catalog for CDC42-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDC42-IT1 Gene

Localization for CDC42-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDC42-IT1 Gene

Pathways & Interactions for CDC42-IT1 Gene

SuperPathways for CDC42-IT1 Gene

No Data Available

Interacting Proteins for CDC42-IT1 Gene

Gene Ontology (GO) - Biological Process for CDC42-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDC42-IT1 Gene

Drugs & Compounds for CDC42-IT1 Gene

No Compound Related Data Available

Transcripts for CDC42-IT1 Gene

mRNA/cDNA for CDC42-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDC42-IT1 Gene

No ASD Table

Relevant External Links for CDC42-IT1 Gene

GeneLoc Exon Structure for
CDC42-IT1
ECgene alternative splicing isoforms for
CDC42-IT1

Expression for CDC42-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDC42-IT1 Gene

genes like me logo Genes that share expression patterns with CDC42-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDC42-IT1 Gene

Orthologs for CDC42-IT1 Gene

Evolution for CDC42-IT1 Gene

ENSEMBL:
Gene Tree for CDC42-IT1 (if available)
TreeFam:
Gene Tree for CDC42-IT1 (if available)

No data available for Orthologs for CDC42-IT1 Gene

Paralogs for CDC42-IT1 Gene

No data available for Paralogs for CDC42-IT1 Gene

Variants for CDC42-IT1 Gene

Additional Variant Information for CDC42-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDC42-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDC42-IT1 Gene

Disorders for CDC42-IT1 Gene

Additional Disease Information for CDC42-IT1

No disorders were found for CDC42-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDC42-IT1 Gene

Publications for CDC42-IT1 Gene

No publications were found for CDC42-IT1 Gene.

Products for CDC42-IT1 Gene

Sources for CDC42-IT1 Gene

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