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Aliases for CD99P1 Gene

Aliases for CD99P1 Gene

  • CD99 Molecule Pseudogene 1 2 3 5
  • CD99 Molecule-Like 1, Pseudogene 2 3
  • CD99 Antigen-Like 1 2 3
  • MIC2-Related 2 3
  • Chromosome X And Y Open Reading Frame 12 2
  • Non-Protein Coding RNA 103 2
  • CD99 Molecule-Like 1 2
  • NCRNA00103 3
  • CXYorf12 3
  • CD99L1 3
  • MIC2R 3

External Ids for CD99P1 Gene

Previous HGNC Symbols for CD99P1 Gene

  • MIC2R
  • NCRNA00103
  • CXYorf12
  • CD99L1

Previous GeneCards Identifiers for CD99P1 Gene

  • GC0XP002528

Summaries for CD99P1 Gene

GeneCards Summary for CD99P1 Gene

CD99P1 (CD99 Molecule Pseudogene 1) is a Pseudogene.

Additional gene information for CD99P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD99P1 Gene

Genomics for CD99P1 Gene

GeneHancer (GH) Regulatory Elements for CD99P1 Gene

Promoters and enhancers for CD99P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ002608 Promoter 1.7 EPDnew Ensembl 650.7 +0.3 336 2.8 PKNOX1 SIN3A DMAP1 ZNF48 GLIS2 ZNF143 SP3 SP5 GLIS1 RCOR2 MIR6089 CD99P1 CD99 LINC00102
GH0XJ002927 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 4.8 +319.4 319444 2.6 CLOCK FOXA2 ARID4B SIN3A DMAP1 THRB ZNF48 YY1 GTF3C2 ELK1 ARSD CD99P1 PIR36938
GH0XJ002614 Enhancer 0.6 Ensembl 0.4 +5.7 5736 1.2 CTCF USF1 JUN TEAD4 TEAD2 GABPA FOSL1 SMARCA4 FOXK2 GABPB1 LINC00102 CD99P1
GH0XJ002630 Enhancer 0.8 Ensembl 0.3 +21.6 21636 0.2 PKNOX1 ZBTB40 EGR1 E2F8 ETV6 CREM MIXL1 HCFC1 ZBTB11 CEBPB CD99 LINC00102 CD99P1 GC0XP002664
GH0XJ002631 Enhancer 0.8 Ensembl 0.3 +22.1 22136 0.4 HDAC1 PKNOX1 ATF1 NFRKB ZBTB40 E2F8 ETV6 CREM MIXL1 HCFC1 CD99 LINC00102 CD99P1 GC0XP002664
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CD99P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CD99P1 Gene

Genomic Locations for CD99P1 Gene
47,965 bases
Plus strand
47,965 bases
Plus strand

Genomic View for CD99P1 Gene

Genes around CD99P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CD99P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CD99P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CD99P1 Gene

Proteins for CD99P1 Gene

Post-translational modifications for CD99P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CD99P1 Gene

Domains & Families for CD99P1 Gene

Gene Families for CD99P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CD99P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CD99P1 Gene

Function for CD99P1 Gene

Phenotypes for CD99P1 Gene

genes like me logo Genes that share phenotypes with CD99P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD99P1 Gene

Localization for CD99P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CD99P1 Gene

Pathways & Interactions for CD99P1 Gene

SuperPathways for CD99P1 Gene

No Data Available

Interacting Proteins for CD99P1 Gene

Gene Ontology (GO) - Biological Process for CD99P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CD99P1 Gene

Drugs & Compounds for CD99P1 Gene

No Compound Related Data Available

Transcripts for CD99P1 Gene

mRNA/cDNA for CD99P1 Gene

(5) Additional mRNA sequences :
(86) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CD99P1 Gene

CD99 molecule pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CD99P1 Gene

No ASD Table

Relevant External Links for CD99P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CD99P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CD99P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CD99P1 Gene:


SOURCE GeneReport for Unigene cluster for CD99P1 Gene:

genes like me logo Genes that share expression patterns with CD99P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CD99P1 Gene

Orthologs for CD99P1 Gene

Evolution for CD99P1 Gene

Gene Tree for CD99P1 (if available)
Gene Tree for CD99P1 (if available)

No data available for Orthologs for CD99P1 Gene

Paralogs for CD99P1 Gene

No data available for Paralogs for CD99P1 Gene

Variants for CD99P1 Gene

Sequence variations from dbSNP and Humsavar for CD99P1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000118802 -- 2,626,703(+) GG/GGG intron_variant
rs1000210710 -- 2,613,827(+) G/A intron_variant
rs1000217875 -- 2,633,819(+) A/G intron_variant
rs1000380453 -- 2,639,492(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000396044 -- 2,645,219(+) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CD99P1 Gene

Variant ID Type Subtype PubMed ID
dgv1310e201 CNV deletion 23290073
dgv1311e201 CNV deletion 23290073
esv21436 CNV loss 19812545
esv2667843 CNV deletion 23128226
esv2739872 CNV deletion 23290073
esv2739875 CNV deletion 23290073
esv2739877 CNV deletion 23290073
esv2739878 CNV deletion 23290073
esv2739879 CNV deletion 23290073
esv2752318 CNV gain 17911159
esv2758855 CNV gain 17122850
esv29626 CNV gain 19812545
esv29994 CNV gain 17803354
esv29996 CNV loss 17803354
esv34985 CNV gain 17911159
esv3558537 CNV deletion 23714750
nsv1125147 CNV duplication 24896259
nsv1140011 CNV duplication 24896259
nsv1148034 CNV duplication 26484159
nsv508003 OTHER sequence alteration 20534489
nsv508748 CNV insertion 20534489

Additional Variant Information for CD99P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CD99P1 Gene

Disorders for CD99P1 Gene

Additional Disease Information for CD99P1

No disorders were found for CD99P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CD99P1 Gene

Publications for CD99P1 Gene

  1. Interaction of long noncoding RNAs and microRNAs in the pathogenesis of idiopathic pulmonary fibrosis. (PMID: 26269497) Huang C … Liu L (Physiological genomics 2015) 2 3 58
  2. MIC2R: a transcribed MIC2-related sequence associated with a CpG island in the human pseudoautosomal region. (PMID: 7833914) Smith MJ … Goodfellow PN (Human molecular genetics 1994) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for CD99P1 Gene

Sources for CD99P1 Gene

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