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Aliases for CD81-AS1 Gene

Subcategory (RNA class) for CD81-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CD81-AS1 Gene

  • CD81 Antisense RNA 1 2 3 5

External Ids for CD81-AS1 Gene

Previous GeneCards Identifiers for CD81-AS1 Gene

  • GC11M002351

Summaries for CD81-AS1 Gene

GeneCards Summary for CD81-AS1 Gene

CD81-AS1 (CD81 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CD81-AS1 include Mycobacterium Tuberculosis 1.

Additional gene information for CD81-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD81-AS1 Gene

Genomics for CD81-AS1 Gene

GeneHancer (GH) Regulatory Elements for CD81-AS1 Gene

Promoters and enhancers for CD81-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J002375 Enhancer 0.8 ENCODE dbSUPER 650.7 +1.9 1926 0.2 CTCF FOXA2 RXRA MAX REST GABPA YY1 SP1 JUND CD81 CD81-AS1 LOC105376520
GH11J002376 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.8 -6764 15.9 HDGF PKNOX1 FOXA2 ATF1 SIN3A ZNF2 YY1 GTF3C2 GLIS2 ZNF143 CD81 ENSG00000199550 KCNQ1 CD81-AS1 PIR51817
GH11J002374 Enhancer 1 VISTA ENCODE dbSUPER 0.7 +3.1 3108 1.4 CTCF KLF1 RXRA MAX RAD21 GABPA YY1 JUND CD81 LOC105376520 ENSG00000199550 CD81-AS1
GH11J002392 Enhancer 0.6 ENCODE dbSUPER 0.4 -15.2 -15248 0.5 SRF CTCF ENSG00000199550 PIR51817 CD81 CD81-AS1
GH11J002369 Enhancer 0.6 dbSUPER 0.4 +8.1 8116 1.1 RXRA MAX REST RAD21 GABPA NR2F2 YY1 SP1 JUND HNF4A GC11P002372 CD81-AS1 RPL26P30
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CD81-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CD81-AS1 Gene

Genomic Locations for CD81-AS1 Gene
chr11:2,328,749-2,377,992
(GRCh38/hg38)
Size:
49,244 bases
Orientation:
Minus strand
chr11:2,349,979-2,399,222
(GRCh37/hg19)

Genomic View for CD81-AS1 Gene

Genes around CD81-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CD81-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CD81-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CD81-AS1 Gene

Function for CD81-AS1 Gene

Phenotypes From GWAS Catalog for CD81-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD81-AS1 Gene

Localization for CD81-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CD81-AS1 Gene

Pathways & Interactions for CD81-AS1 Gene

SuperPathways for CD81-AS1 Gene

No Data Available

Interacting Proteins for CD81-AS1 Gene

Gene Ontology (GO) - Biological Process for CD81-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CD81-AS1 Gene

Drugs & Compounds for CD81-AS1 Gene

No Compound Related Data Available

Transcripts for CD81-AS1 Gene

mRNA/cDNA for CD81-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CD81-AS1 Gene

No ASD Table

Relevant External Links for CD81-AS1 Gene

GeneLoc Exon Structure for
CD81-AS1
ECgene alternative splicing isoforms for
CD81-AS1

Expression for CD81-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CD81-AS1 Gene

genes like me logo Genes that share expression patterns with CD81-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CD81-AS1 Gene

Orthologs for CD81-AS1 Gene

Evolution for CD81-AS1 Gene

ENSEMBL:
Gene Tree for CD81-AS1 (if available)
TreeFam:
Gene Tree for CD81-AS1 (if available)

No data available for Orthologs for CD81-AS1 Gene

Paralogs for CD81-AS1 Gene

No data available for Paralogs for CD81-AS1 Gene

Variants for CD81-AS1 Gene

Sequence variations from dbSNP and Humsavar for CD81-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000045433 -- 2,377,012(-) C/G intron_variant
rs1000107028 -- 2,352,041(-) T/G intron_variant
rs1000160857 -- 2,351,766(-) C/T intron_variant
rs1000226280 -- 2,339,934(-) T/C intron_variant
rs1000286885 -- 2,339,570(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CD81-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1568n54 CNV loss 21841781
esv3547220 CNV deletion 23714750
nsv467645 CNV gain 19166990
nsv469928 CNV loss 18288195
nsv509382 CNV insertion 20534489
nsv553047 CNV gain 21841781
nsv951286 CNV deletion 24416366
nsv982970 CNV duplication 23825009

Additional Variant Information for CD81-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CD81-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CD81-AS1 Gene

Disorders for CD81-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CD81-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
mycobacterium tuberculosis 1
  • mycobacterium tuberculosis, susceptibility to, 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CD81-AS1

genes like me logo Genes that share disorders with CD81-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CD81-AS1 Gene

Publications for CD81-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CD81-AS1 Gene

Sources for CD81-AS1 Gene

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