Aliases for CD69 Gene
Aliases for CD69 Gene
External Ids for CD69 Gene
- HGNC: 1694
- Entrez Gene: 969
- Ensembl: ENSG00000110848
- OMIM: 107273
- UniProtKB: Q07108
Previous GeneCards Identifiers for CD69 Gene
- GC12M009587
- GC12M010027
- GC12M009805
- GC12M009796
- GC12M009907
- GC12M009648
- GC12M009908
- GC12M010062
- GC12M010256
- GC12M010498
- GC12M009811
- GC12M010321
- GC12M010760
- GC12M010993
- GC12M011290
- GC12M011525
- GC12M011719
- GC12M011906
Summaries for CD69 Gene
-
This gene encodes a member of the calcium dependent lectin superfamily of type II transmembrane receptors. Expression of the encoded protein is induced upon activation of T lymphocytes, and may play a role in proliferation. Furthermore, the protein may act to transmit signals in natural killer cells and platelets. [provided by RefSeq, Aug 2011]
GeneCards Summary for CD69 Gene
CD69 (CD69 Molecule) is a Protein Coding gene. Diseases associated with CD69 include Asthma and Common Variable Immunodeficiency. Among its related pathways are Hematopoietic Stem Cell Differentiation Pathways and Lineage-specific Markers and Kit receptor signaling pathway. Gene Ontology (GO) annotations related to this gene include calcium ion binding and carbohydrate binding. An important paralog of this gene is CLEC2A.
UniProtKB/Swiss-Prot for CD69 Gene
-
Involved in lymphocyte proliferation and functions as a signal transmitting receptor in lymphocytes, natural killer (NK) cells, and platelets.
Additional gene information for CD69 Gene
- Monarch Initiative
- Search for CD69 at DataMed
- Search for CD69 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD69 Gene
Genomics for CD69 Gene
GeneHancer (GH) Regulatory Elements for CD69 Gene
Promoters and enhancers for CD69 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around CD69 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the CD69 gene promoter:
-
- CREB
- AP-1
- GR-alpha
- GR
- STAT5A
- c-Jun
- deltaCREB
Regulatory Element Products
Genomic Locations for CD69 Gene
Genomic Locations for CD69 Gene
- chr12:9,752,486-9,760,901
- (GRCh38/hg38)
- Size:
- 8,416 bases
- Orientation:
- Minus strand
- chr12:9,905,082-9,913,497
- (GRCh37/hg19)
- Size:
- 8,416 bases
- Orientation:
- Minus strand
Genomic View for CD69 Gene
Genes around CD69 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p13.31 by Entrez Gene
- 12p13.31 by HGNC
- 12p13.31 by Ensembl
CD69 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CD69 Gene
Proteins for CD69 Gene
-
Protein details for CD69 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q07108-CD69_HUMAN
- Recommended name:
- Early activation antigen CD69
- Protein Accession:
- Q07108
Protein attributes for CD69 Gene
- Size:
- 199 amino acids
- Molecular mass:
- 22559 Da
- Quaternary structure:
-
- Homodimer; disulfide-linked.
Protein Expression for CD69 Gene
Post-translational modifications for CD69 Gene
- Constitutive Ser/Thr phosphorylation in both mature thymocytes and activated T-lymphocytes.
- Glycosylation at Asn166
- Modification sites at PhosphoSitePlus
Other Protein References for CD69 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for CD69 (CD69)
- Novus Biologicals Antibodies for CD69
-
Abcam antibodies for CD69
- Invitrogen Antibodies for CD69 (AFLGC-CD69)
- GeneTex CD69 Antibody for CD69
-
Boster Bio Antibodies for CD69
-
Santa Cruz Biotechnology (SCBT) Antibodies for CD69
- Sino Biological Antibodies for CD69
Protein Products
- R&D Systems Proteins and Enzymes for CD69
-
OriGene Purified Proteins for CD69
- Search Origene for MassSpec and Protein Over-expression Lysates for CD69
- Origene Custom Protein Services for CD69
- Sino Biological Recombinant Proteins for CD69
- Sino Biological Cell Lysates for CD69
- ProSpec Recombinant Proteins for CD69
- Search GeneTex for Proteins for CD69
-
ProSci Proteins for CD69
-
Abcam proteins for CD69
No data available for DME Specific Peptides for CD69 Gene
Domains & Families for CD69 Gene
Gene Families for CD69 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- CD markers
- Predicted membrane proteins
Protein Domains for CD69 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for CD69 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for CD69 Gene
Function for CD69 Gene
Molecular function for CD69 Gene
- UniProtKB/Swiss-Prot Function:
- Involved in lymphocyte proliferation and functions as a signal transmitting receptor in lymphocytes, natural killer (NK) cells, and platelets.
- UniProtKB/Swiss-Prot Induction:
- By antigens, mitogens or activators of PKC on the surface of T and B-lymphocytes. By interaction of IL-2 with the p75 IL-2R on the surface of NK cells.
- GENATLAS Biochemistry:
- cell differentiation antigen CD69,60kDa homodimer,membrane glycoprotein,in the NK (natural killer) complex,identified by monoclonal antibody C1.18,expressed in NK and many other hemopoietic cells
Phenotypes From GWAS Catalog for CD69 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004888 | transmembrane signaling receptor activity | TAS | 8340758 |
| GO:0005509 | calcium ion binding | IEA | -- |
| GO:0005515 | protein binding | IPI | 16525420 |
| GO:0030246 | carbohydrate binding | IEA | -- |
| GO:0042803 | protein homodimerization activity | IMP | 11101293 |
Phenotypes for CD69 Gene
- MGI mutant phenotypes for CD69:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for CD69:
Animal Models for CD69 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CD69
-
CRISPR Products
-
OriGene CRISPR knockouts for CD69
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- Applied Biological Materials CRISPR for CD69
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CD69
- GenScript: Design CRISPR guide RNA sequences for CD69
miRNA for CD69 Gene
- miRTarBase miRNAs that target CD69
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CD69
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- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CD69
- genomics-online: shRNA clones - Search results for available CD69 gene related products
Clone Products
- GenScript: Custom all cDNA clones Services for CD69
- Sino Biological Human cDNA Clone for CD69
- Addgene plasmids for CD69
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for CD69
- genomics-online: cdna clones - Search results for available CD69 gene related products
- orf clones - Search results for available CD69 gene related products
- Applied Biological Materials Clones for CD69
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for CD69
Cell Line Products
-
Horizon Cell Lines for CD69
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CD69 Gene
Localization for CD69 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CD69 Gene
- Membrane; Single-pass type II membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 3 |
| nucleus | 2 |
| cytosol | 2 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
| lysosome | 1 |
| endosome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005887 | integral component of plasma membrane | TAS | 8340758 |
| GO:0009897 | external side of plasma membrane | IEA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
| GO:0032991 | protein-containing complex | IMP | 11101293 |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for CD69 Gene
Pathways & Interactions for CD69 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | B Cell Development Pathways | ||
| 2 | Hematopoietic Stem Cell Differentiation Pathways and Lineage-specific Markers | ||
| 3 | Kit receptor signaling pathway | ||
Pathways by source for CD69 Gene
1 BioSystems pathway for CD69 Gene
2 R&D Systems pathways for CD69 Gene
Interacting Proteins for CD69 Gene
Selected Interacting proteins:
Q07108-CD69_HUMAN
ENSP00000228434
for CD69 Gene via
UniProtKB
STRING
IID
GPS-Prot Interaction Network for CD69
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0007165 | signal transduction | IEA | -- |
| GO:0035690 | cellular response to drug | IEA | -- |
Drugs & Compounds for CD69 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| tocilizumab | Approved | Pharma | Immunotherapies | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
Drug Products
Transcripts for CD69 Gene
mRNA/cDNA for CD69 Gene
- (1) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (197) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000228434 1676 bps (uc001qwk.3)
- ENST00000536709 1020 bps (uc010sgu.2)
- ENST00000416624 962 bps (uc010sgv.2)
- ENST00000543147 605 bps (uc058law.1)
CRISPR Products
-
OriGene CRISPR knockouts for CD69
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for CD69
- genomics-online: gRNA clones - Search results for available CD69 gene related products
- Applied Biological Materials CRISPR for CD69
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CD69
- GenScript: Design CRISPR guide RNA sequences for CD69
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CD69
- Browse OriGene Inhibitory RNA Products For CD69
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CD69
- genomics-online: shRNA clones - Search results for available CD69 gene related products
Clone Products
- GenScript: Custom all cDNA clones Services for CD69
- Sino Biological Human cDNA Clone for CD69
- Addgene plasmids for CD69
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for CD69
- genomics-online: cdna clones - Search results for available CD69 gene related products
- orf clones - Search results for available CD69 gene related products
- Applied Biological Materials Clones for CD69
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for CD69
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||
| SP2: | - | - | - | ||||||||||||
| SP3: | - | ||||||||||||||
| SP4: |
Expression for CD69 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Blood (Hematopoietic System)
- Basophils Peripheral Blood
- T-Cytotoxic Cells Peripheral Blood
- T-Cytotoxic Cells Thymus
-
Eye (Sensory Organs)
- Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
-
Epithelial Cells
- Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
-
Thymus (Hematopoietic System)
- T-Cytotoxic Cells Thymus
- Bone (Muscoskeletal System)
- NULL (Uncategorized)
mRNA differential expression in normal tissues according to GTEx for CD69 Gene
This gene is overexpressed in Whole Blood (x6.4) and Spleen (x4.5).
This gene is overexpressed in Peripheral blood mononuclear cells (57.6) and Platelet (10.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CD69 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of CD69 Gene:
CD69SOURCE GeneReport for Unigene cluster for CD69 Gene:
Hs.208854mRNA Expression by UniProt/SwissProt for CD69 Gene:
Q07108-CD69_HUMAN
Tissue specificity:
Expressed on the surface of activated T-cells, B-cells, natural killer cells, neutrophils, eosinophils, epidermal Langerhans cells and platelets.
Evidence on tissue expression from TISSUES for CD69 Gene
- Blood(4.9)
- Pancreas(4.1)
- Spleen(3.6)
- Lymph node(3.5)
- Bone marrow(3)
- Lung(3)
- Intestine(2.6)
- Liver(2)
Primer Products
-
OriGene qPCR primer pairs for CD69
-
OriGene qPCR primer pairs and template standards for CD69
- genomics-online: primer clones - Search results for available CD69 gene related products
Gene Expression Assay Products
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CD69 Gene
Orthologs for CD69 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CD69 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | CD69 34 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | CD69 34 33 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Cd69 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Cd69 16 34 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | CD69 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | CD69 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | LOC769354 33 |
|
||
| -- 34 |
|
OneToMany | |||
| BLEC1 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| Y-LEC1 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| 17.5 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
OneToMany | |
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany | |||
| -- 34 |
|
OneToMany |
- Species where no ortholog for CD69 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Evolution for CD69 Gene
- ENSEMBL:
- Gene Tree for CD69 (if available)
- TreeFam:
- Gene Tree for CD69 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for CD69: view image
Paralogs for CD69 Gene
Variants for CD69 Gene
| SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000137412 | -- | 9,754,455(-) | G/A | intron_variant | |
| rs1000682406 | -- | 9,758,910(-) | C/G | intron_variant | |
| rs1000882261 | -- | 9,752,053(-) | C/G | downstream_transcript_variant | |
| rs1001010428 | -- | 9,758,581(-) | G/A | intron_variant | |
| rs1001799834 | -- | 9,759,074(-) | C/T | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2759878 | CNV | gain+loss | 17122850 |
| nsv1051530 | CNV | gain | 25217958 |
| nsv952801 | CNV | duplication | 24416366 |
Residual Variation Intolerance Score:
59.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.18;
23.85% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for CD69 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CD69
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CD69 Gene
Disorders for CD69 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| asthma |
|
|
| common variable immunodeficiency |
|
|
| actinic prurigo |
|
|
| stromal keratitis |
|
|
| malaria |
|
|
Search CD69 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for CD69
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for CD69 Gene
Publications for CD69 Gene
- Crystal structure of human CD69: a C-type lectin-like activation marker of hematopoietic cells. (PMID: 11101293) Natarajan K … Mariuzza RA (Biochemistry 2000) 3 4 22 58
- Molecular characterization of the early activation antigen CD69: a type II membrane glycoprotein related to a family of natural killer cell activation antigens. (PMID: 8100776) Ziegler SF … Alderson MR (European journal of immunology 1993) 3 4 22 58
- Molecular cloning, expression, and chromosomal localization of the human earliest lymphocyte activation antigen AIM/CD69, a new member of the C-type animal lectin superfamily of signal-transmitting receptors. (PMID: 8340758) López-Cabrera M … Sánchez-Madrid F (The Journal of experimental medicine 1993) 3 4 22 58
- Constitutive expression of CD69 in interspecies T-cell hybrids and locus assignment to human chromosome 12. (PMID: 1612643) Cambiaggi C … Accolla RS (Immunogenetics 1992) 2 3 22 58
- In silico replication of the genome-wide association results of the Type 1 Diabetes Genetics Consortium. (PMID: 20378605) Qu HQ … Polychronakos C (Human molecular genetics 2010) 3 44 58
Products for CD69 Gene
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- antibodies-online: Search results for 433 available CD69 Antibodies ranked by validation data
- Compare Top CD69 Antibodies
- antibodies-online: Search results for 20 available CD69 Elisa Kits ranked by validation data
- Compare Top CD69 Elisa Kits
- antibodies-online: Search results for 17 available CD69 Proteins ranked by validation data
- Compare Top CD69 Proteins
- GeneTex CD69 Antibody for CD69
- Search GeneTex for Proteins for CD69
- Santa Cruz Biotechnology (SCBT) Antibodies for CD69
- Search Santa Cruz Biotechnology (SCBT) for CD69 siRNA/shRNA
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- genomics-online: cdna clones - Search results for available CD69 gene related products
- orf clones - Search results for available CD69 gene related products
- genomics-online: gRNA clones - Search results for available CD69 gene related products
- genomics-online: primer clones - Search results for available CD69 gene related products
- genomics-online: shRNA clones - Search results for available CD69 gene related products
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for CD69
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- Browse Boster Bio ELISA Kits
Sources for CD69 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
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