Aliases for CD44-AS1 Gene

Subcategory (RNA class) for CD44-AS1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for CD44-AS1 Gene

  • CD44 Antisense RNA 1 2 3 5
  • CD44-AS1 2 170
  • HSALNG0083610 169

External Ids for CD44-AS1 Gene

Summaries for CD44-AS1 Gene

GeneCards Summary for CD44-AS1 Gene

CD44-AS1 (CD44 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CD44-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CD44-AS1 Gene

Genomics for CD44-AS1 Gene

GeneHancer (GH) Regulatory Elements for CD44-AS1 Gene

Promoters and enhancers for CD44-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J035211 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 756.6 -1.0 -1045 8.9 POLR2A TCF7L2 NR2F6 HLF RAD21 SP1 MAFK CEBPA FOXA2 CEBPB CD44-AS1 MIR1343 APIP PDHX ENSG00000255004 ENSG00000251194 NONHSAG008050.2 CD44
GH11J034354 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 23.9 +858.1 858111 6.1 ZNF24 SP1 CTCF LCORL POLR2A FOS ZNF362 MYC CC2D1A NFYC ABTB2 HSALNG0083566 ENSG00000251194 CD44-AS1 NAT10 FBXO3 CAPRIN1 CAT ELF5 LOC100216355
GH11J035661 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 12.4 -448.5 -448516 4.2 ZNF24 ZBTB40 RBPJ SMARCE1 POLR2A USF2 HDAC2 NR2F1 NR2F6 CREB1 TRIM44 TRAF6 ENSG00000251194 CD44-AS1 FJX1 piR-38351-070
GH11J034914 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.1 +298.1 298140 4.5 SP1 ZBTB40 FOXA1 RBPJ POLR2A CREB1 HCFC1 MIXL1 ZNF362 CC2D1A APIP PDHX ENSG00000251194 CD44-AS1 ENSG00000271369 CAT MIR1343
GH11J035137 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.1 +72.4 72419 10.4 ZNF24 SP1 POLR2A RUNX1 MYC ETV6 RELA CEBPB MAX CTCF CD44 ENSG00000251194 LOC100507144 CD44-AS1 APIP PDHX SNORD164-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CD44-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CD44-AS1 Gene

Genomic Locations for CD44-AS1 Gene
chr11:35,210,342-35,214,985
(GRCh38/hg38)
Size:
4,644 bases
Orientation:
Minus strand
chr11:35,231,890-35,236,532
(GRCh37/hg19)
Size:
4,643 bases
Orientation:
Minus strand

Genomic View for CD44-AS1 Gene

Genes around CD44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CD44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CD44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CD44-AS1 Gene

Proteins for CD44-AS1 Gene

Post-translational modifications for CD44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CD44-AS1 Gene

Domains & Families for CD44-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CD44-AS1 Gene

Function for CD44-AS1 Gene

Phenotypes From GWAS Catalog for CD44-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD44-AS1 Gene

Localization for CD44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CD44-AS1 Gene

Pathways & Interactions for CD44-AS1 Gene

PathCards logo

SuperPathways for CD44-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CD44-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CD44-AS1 Gene

Drugs & Compounds for CD44-AS1 Gene

No Compound Related Data Available

Transcripts for CD44-AS1 Gene

mRNA/cDNA for CD44-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CD44-AS1 Gene

No ASD Table

Relevant External Links for CD44-AS1 Gene

GeneLoc Exon Structure for
CD44-AS1
ECgene alternative splicing isoforms for
CD44-AS1

Expression for CD44-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CD44-AS1 Gene

Orthologs for CD44-AS1 Gene

Evolution for CD44-AS1 Gene

ENSEMBL:
Gene Tree for CD44-AS1 (if available)
TreeFam:
Gene Tree for CD44-AS1 (if available)

No data available for Orthologs for CD44-AS1 Gene

Paralogs for CD44-AS1 Gene

No data available for Paralogs for CD44-AS1 Gene

Variants for CD44-AS1 Gene

Additional Variant Information for CD44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CD44-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CD44-AS1 Gene

Disorders for CD44-AS1 Gene

No disorders were found for CD44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CD44-AS1 Gene

Publications for CD44-AS1 Gene

  1. Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma. (PMID: 28103885) Zhou M … Sun J (Molecular cancer 2017) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for CD44-AS1 Gene

Sources for CD44-AS1 Gene