Aliases for CD300LF Gene
Aliases for CD300LF Gene
External Ids for CD300LF Gene
- HGNC: 29883
- Entrez Gene: 146722
- Ensembl: ENSG00000186074
- OMIM: 609807
- UniProtKB: Q8TDQ1
Previous GeneCards Identifiers for CD300LF Gene
- GC17M070204
- GC17M072690
- GC17M068099
Summaries for CD300LF Gene
-
This gene encodes a member of the CD300 protein family. Members of this family are cell surface glycoproteins with a single IgV-like extracellular domain, and are involved in the regulation of immune response. The encoded protein is an inhibitory receptor. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
GeneCards Summary for CD300LF Gene
CD300LF (CD300 Molecule Like Family Member F) is a Protein Coding gene. Among its related pathways are Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell and Innate Immune System. An important paralog of this gene is CD300LD.
UniProtKB/Swiss-Prot for CD300LF Gene
-
Acts as an inhibitory receptor for myeloid cells and mast cells (PubMed:15549731). Positively regulates the phagocytosis of apoptotic cells (efferocytosis) via phosphatidylserine (PS) recognition; recognizes and binds PS as a ligand which is expressed on the surface of apoptotic cells. Plays an important role in the maintenance of immune homeostasis, by promoting macrophage-mediated efferocytosis and by inhibiting dendritic cell-mediated efferocytosis (By similarity). Negatively regulates Fc epsilon receptor-dependent mast cell activation and allergic responses via binding to ceramide and sphingomyelin which act as ligands (PubMed:24035150). May act as a coreceptor for interleukin 4 (IL-4). Associates with and regulates IL-4 receptor alpha-mediated responses by augmenting IL-4- and IL-13-induced signaling (By similarity). Negatively regulates the Toll-like receptor (TLR) signaling mediated by MYD88 and TRIF through activation of PTPN6/SHP-1 and PTPN11/SHP-2 (PubMed:22043923). Inhibits osteoclast formation. Induces macrophage cell death upon engagement (By similarity).
Additional gene information for CD300LF Gene
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD300LF Gene
Genomics for CD300LF Gene
GeneHancer (GH) Regulatory Elements for CD300LF Gene
Promoters and enhancers for CD300LF Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around CD300LF on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the CD300LF gene promoter:
-
- STAT5B
- STAT5A
- Olf-1
- AREB6
- ER-alpha
- ZID
- Pax-5
- GR
- GR-alpha
- GR-beta
Regulatory Element Products
Genomic Locations for CD300LF Gene
Genomic Locations for CD300LF Gene
- chr17:74,694,308-74,713,059
- (GRCh38/hg38)
- Size:
- 18,752 bases
- Orientation:
- Minus strand
- chr17:72,690,452-72,709,117
- (GRCh37/hg19)
- Size:
- 18,666 bases
- Orientation:
- Minus strand
Genomic View for CD300LF Gene
Genes around CD300LF on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q25.1 by Entrez Gene
- 17q25.1 by HGNC
- 17q25.1 by Ensembl
CD300LF Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CD300LF Gene
Proteins for CD300LF Gene
-
Protein details for CD300LF Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8TDQ1-CLM1_HUMAN
- Recommended name:
- CMRF35-like molecule 1
- Protein Accession:
- Q8TDQ1
- B2RCL2
- C9JDN3
- Q3Y6P0
- Q6UX24
- Q7Z6A6
- Q7Z7I4
- Q7Z7I5
- Q8N6D0
- Q8NAF5
Protein attributes for CD300LF Gene
- Size:
- 290 amino acids
- Molecular mass:
- 32335 Da
- Quaternary structure:
-
- Interacts with PTPN6/SHP-1 in a tyrosine phosphorylation dependent manner (PubMed:15184070, PubMed:15549731). Interacts with IL4R (By similarity).
Protein Expression for CD300LF Gene
Post-translational modifications for CD300LF Gene
- Phosphorylated on tyrosine.
- Glycosylation at posLast=8888
- Modification sites at PhosphoSitePlus
Other Protein References for CD300LF Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for CD300LF (CD300f/LMIR3)
-
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-
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-
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Protein Products
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-
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Assay Products
- R&D Systems Proteome Profiler Antibody Arrays and other biochemical assays for CD300LF (CD300f/LMIR3)
- antibodies-online: Search results for 10 available IREM1 Elisa Kits ranked by validation data
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-
Quality Products:
No data available for DME Specific Peptides for CD300LF Gene
Domains & Families for CD300LF Gene
Gene Families for CD300LF Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- CD markers
- Predicted intracellular proteins
- Predicted membrane proteins
- Predicted secreted proteins
Protein Domains for CD300LF Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for CD300LF Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q8TDQ1- Family:
-
- Belongs to the CD300 family.
Function for CD300LF Gene
Molecular function for CD300LF Gene
- UniProtKB/Swiss-Prot Function:
- Acts as an inhibitory receptor for myeloid cells and mast cells (PubMed:15549731). Positively regulates the phagocytosis of apoptotic cells (efferocytosis) via phosphatidylserine (PS) recognition; recognizes and binds PS as a ligand which is expressed on the surface of apoptotic cells. Plays an important role in the maintenance of immune homeostasis, by promoting macrophage-mediated efferocytosis and by inhibiting dendritic cell-mediated efferocytosis (By similarity). Negatively regulates Fc epsilon receptor-dependent mast cell activation and allergic responses via binding to ceramide and sphingomyelin which act as ligands (PubMed:24035150). May act as a coreceptor for interleukin 4 (IL-4). Associates with and regulates IL-4 receptor alpha-mediated responses by augmenting IL-4- and IL-13-induced signaling (By similarity). Negatively regulates the Toll-like receptor (TLR) signaling mediated by MYD88 and TRIF through activation of PTPN6/SHP-1 and PTPN11/SHP-2 (PubMed:22043923). Inhibits osteoclast formation. Induces macrophage cell death upon engagement (By similarity).
Phenotypes From GWAS Catalog for CD300LF Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001786 | phosphatidylserine binding | ISS | -- |
| GO:0005136 | interleukin-4 receptor binding | ISS | -- |
| GO:0008289 | lipid binding | IEA | -- |
| GO:0097001 | ceramide binding | IDA | 24035150 |
Phenotypes for CD300LF Gene
- MGI mutant phenotypes for CD300LF:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for CD300LF:
Animal Models for CD300LF Gene
Animal Model Products
-
Taconic Biosciences Mouse Models for CD300LF
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-
CRISPR Products
-
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-
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-
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miRNA for CD300LF Gene
- miRTarBase miRNAs that target CD300LF
miRNA Products
Inhibitory RNA Products
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Clone Products
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OriGene ORF clones in human for CD300LF
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
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Cell Line Products
-
Horizon Cell Lines for CD300LF
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CD300LF Gene
Localization for CD300LF Gene
Subcellular locations from UniProtKB/Swiss-Prot for CD300LF Gene
- Cell membrane; Single-pass type I membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 2 |
| mitochondrion | 1 |
| endoplasmic reticulum | 1 |
| lysosome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for CD300LF Gene
Pathways & Interactions for CD300LF Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Class I MHC mediated antigen processing and presentation | ||
| 2 | Innate Immune System |
.61
|
|
| 3 | Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell | ||
Pathways by source for CD300LF Gene
3 Reactome pathways for CD300LF Gene
Interacting Proteins for CD300LF Gene
Selected Interacting proteins:
Q8TDQ1-CLM1_HUMAN
ENSP00000327075
for CD300LF Gene via
MINT
IID
STRING
GPS-Prot Interaction Network for CD300LF
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002376 | immune system process | IEA | -- |
| GO:0033004 | negative regulation of mast cell activation | IDA | 24035150 |
| GO:0034125 | negative regulation of MyD88-dependent toll-like receptor signaling pathway | IMP | 22043923 |
| GO:0035666 | TRIF-dependent toll-like receptor signaling pathway | IMP | 22043923 |
| GO:0035772 | interleukin-13-mediated signaling pathway | ISS | -- |
No data available for SIGNOR curated interactions for CD300LF Gene
Transcripts for CD300LF Gene
mRNA/cDNA for CD300LF Gene
- (13) REFSEQ mRNAs :
- (10) Additional mRNA sequences :
- (47) Selected AceView cDNA sequences:
- (10) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000326165 1764 bps (uc002jlg.5)
- ENST00000469092 1825 bps (uc002jli.5)
- ENST00000301573 1785 bps (uc002jlh.5)
- ENST00000583937 1275 bps (uc010wra.4)
- ENST00000464910 996 bps (uc060jpa.1)
Unigene Clusters for CD300LF Gene
CRISPR Products
-
OriGene CRISPR knockouts for CD300LF
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- genomics-online: gRNA clones - Search results for available IREM1 gene related products
- Applied Biological Materials CRISPR for CD300LF
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CD300LF
- GenScript: Design CRISPR guide RNA sequences for CD300LF
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CD300LF
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Clone Products
-
OriGene ORF clones in human for CD300LF
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- genomics-online: cdna clones - Search results for available IREM1 gene related products
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for CD300LF (CD300f/LMIR3)
Expression for CD300LF Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
mRNA differential expression in normal tissues according to GTEx for CD300LF Gene
This gene is overexpressed in Whole Blood (x35.0) and Spleen (x7.0).
This gene is overexpressed in Monocytes (35.2) and Peripheral blood mononuclear cells (27.2).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CD300LF Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of CD300LF Gene:
CD300LFSOURCE GeneReport for Unigene cluster for CD300LF Gene:
Hs.567706mRNA Expression by UniProt/SwissProt for CD300LF Gene:
Q8TDQ1-CLM1_HUMAN
Tissue specificity:
Highly expressed in spleen, peripheral blood leukocyte and monocyte, and lung. Weakly expressed in thymus, heart, brain, placenta, liver, skeletal muscle, kidney, pancreas, prostate, testis, ovary, small intestine or colon. Expressed selectively in monocytes and monocyte-related cells.
Evidence on tissue expression from TISSUES for CD300LF Gene
- Lung(4.9)
- Intestine(4.7)
- Blood(4.6)
- Skin(4)
- Nervous system(4)
- Eye(3.9)
- Pancreas(3.6)
- Liver(2.9)
- Muscle(2.9)
- Spleen(2)
Primer Products
-
OriGene qPCR primer pairs for CD300LF
-
OriGene qPCR primer pairs and template standards for CD300LF
- genomics-online: primer clones - Search results for available IREM1 gene related products
Gene Expression Assay Products
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CD300LF Gene
Orthologs for CD300LF Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CD300LF 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | CD300LF 33 |
|
||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| mouse (Mus musculus) |
Mammalia | Cd300lf 16 34 33 |
|
||
| Gm11711 34 |
|
ManyToMany | |||
| Cd300lh 34 |
|
ManyToMany | |||
| Gm11710 34 |
|
ManyToMany | |||
| Cd300ld 34 |
|
ManyToMany | |||
| Gm11709 34 |
|
ManyToMany | |||
| cow (Bos Taurus) |
Mammalia | CD300LF 33 |
|
||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| rat (Rattus norvegicus) |
Mammalia | Cd300lf 33 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
ManyToMany | |
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
OneToMany | |
| chicken (Gallus gallus) |
Aves | -- 34 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
| -- 34 |
|
ManyToMany |
- Species where no ortholog for CD300LF was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Evolution for CD300LF Gene
- ENSEMBL:
- Gene Tree for CD300LF (if available)
- TreeFam:
- Gene Tree for CD300LF (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for CD300LF: view image
Paralogs for CD300LF Gene
Variants for CD300LF Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000108071 | -- | 74,714,710(-) | A/G | upstream_transcript_variant | |
| rs1000379274 | -- | 74,709,085(-) | G/A | intron_variant | |
| rs1000417750 | -- | 74,703,474(-) | C/T | intron_variant | |
| rs1000742501 | -- | 74,698,870(-) | G/C | intron_variant | |
| rs1001092834 | -- | 74,698,686(-) | G/C | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3282n100 | CNV | gain | 25217958 |
| dgv5768n54 | CNV | gain | 21841781 |
| esv2751770 | CNV | gain | 17911159 |
| esv33995 | CNV | loss | 17666407 |
| esv3573820 | CNV | gain | 25503493 |
| esv3641230 | CNV | gain | 21293372 |
Residual Variation Intolerance Score:
82.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.79;
16.62% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for CD300LF Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CD300LF Gene
Disorders for CD300LF Gene
Additional Disease Information for CD300LF
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for CD300LF Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CD300LF Gene
Publications for CD300LF Gene
- IgSF13, a novel human inhibitory receptor of the immunoglobulin superfamily, is preferentially expressed in dendritic cells and monocytes. (PMID: 15184070) Sui L … Cao X (Biochemical and biophysical research communications 2004) 3 4 22 58
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 2 3 4 58
- Sphingomyelin and ceramide are physiological ligands for human LMIR3/CD300f, inhibiting FcεRI-mediated mast cell activation. (PMID: 24035150) Izawa K … Kitaura J (The Journal of allergy and clinical immunology 2014) 3 4 58
- CD300a and CD300f differentially regulate the MyD88 and TRIF-mediated TLR signalling pathways through activation of SHP-1 and/or SHP-2 in human monocytic cell lines. (PMID: 22043923) Kim EJ … Lee WH (Immunology 2012) 3 4 58
- Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study. (PMID: 20031577) Danik JS … Ridker PM (Circulation. Cardiovascular genetics 2009) 3 44 58
Products for CD300LF Gene
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- GeneTex CD300LF Antibody for CD300LF
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- genomics-online: cdna clones - Search results for available IREM1 gene related products
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Sources for CD300LF Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
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