Aliases for CD27-AS1 Gene

Subcategory (RNA class) for CD27-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for CD27-AS1 Gene

  • CD27 Antisense RNA 1 2 3 5
  • CD27-AS1 2 5 165
  • CD27 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG010301.2 91
  • HSALNG0088857 164

External Ids for CD27-AS1 Gene

Previous GeneCards Identifiers for CD27-AS1 Gene

  • GC12M006551

Summaries for CD27-AS1 Gene

GeneCards Summary for CD27-AS1 Gene

CD27-AS1 (CD27 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CD27-AS1 include Lymphoproliferative Syndrome 2.

Additional gene information for CD27-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CD27-AS1 Gene

Genomics for CD27-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CD27-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CD27-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CD27-AS1 Gene

Genomic Locations for CD27-AS1 Gene
chr12:6,439,001-6,451,928
(GRCh38/hg38)
Size:
12,928 bases
Orientation:
Minus strand
chr12:6,548,167-6,560,733
(GRCh37/hg19)
Size:
12,567 bases
Orientation:
Minus strand

Genomic View for CD27-AS1 Gene

Genes around CD27-AS1 on UCSC Golden Path with GeneCards custom track
CD27-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CD27-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CD27-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CD27-AS1 Gene

Proteins for CD27-AS1 Gene

Post-translational modifications for CD27-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CD27-AS1 Gene

Domains & Families for CD27-AS1 Gene

Gene Families for CD27-AS1 Gene

genes like me logo Genes that share domains with CD27-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CD27-AS1 Gene

Function for CD27-AS1 Gene

Phenotypes From GWAS Catalog for CD27-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD27-AS1 Gene

Localization for CD27-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CD27-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CD27-AS1 Gene

Pathways & Interactions for CD27-AS1 Gene

PathCards logo

SuperPathways for CD27-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CD27-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CD27-AS1 Gene

Drugs & Compounds for CD27-AS1 Gene

No Compound Related Data Available

Transcripts for CD27-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CD27-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000351B7C_9606 lncRNA 2364 5

HGNC: 43896,

RefSeq: NR_015382,

LncBook: HSALNT0184792,

LNCipedia: CD27-AS1:5,

NONCODE: NONHSAT026070.2,

URS00002FD210_9606 lncRNA 1766 4

Ensembl: ENST00000545339 (view in UCSC) ,

LncBook: HSALNT0184830,

LNCipedia: CD27-AS1:3,

NONCODE: NONHSAT026072.2,

URS000005822B_9606 lncRNA 1094 4

Ensembl: ENST00000399492 (view in UCSC) ,

LncBook: HSALNT0184840,

LNCipedia: CD27-AS1:13,

NONCODE: NONHSAT026077.2,

URS0000EEDC81_9606 lncRNA 2548 1

Ensembl: ENST00000659623 (view in UCSC) ,

URS0000EF0512_9606 lncRNA 1912 1

Ensembl: ENST00000670713 (view in UCSC) ,

CD27-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CD27-AS1 Gene

6 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CD27-AS1 Gene

No ASD Table

Relevant External Links for CD27-AS1 Gene

GeneLoc Exon Structure for
CD27-AS1

Expression for CD27-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CD27-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CD27-AS1

SOURCE GeneReport for Unigene cluster for CD27-AS1 Gene:

Hs.655224
genes like me logo Genes that share expression patterns with CD27-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CD27-AS1 Gene

Orthologs for CD27-AS1 Gene

Evolution for CD27-AS1 Gene

ENSEMBL:
Gene Tree for CD27-AS1 (if available)
TreeFam:
Gene Tree for CD27-AS1 (if available)

No data available for Orthologs for CD27-AS1 Gene

Paralogs for CD27-AS1 Gene

No data available for Paralogs for CD27-AS1 Gene

Variants for CD27-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CD27-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
636496 Uncertain Significance: not provided 6,450,275(-) C/G MISSENSE_VARIANT
636587 Likely Pathogenic: not provided 6,451,388(-) CCT/C FRAMESHIFT_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
644090 Uncertain Significance: Lymphoproliferative syndrome 2 6,450,257(-) C/A MISSENSE_VARIANT
649825 Uncertain Significance: Lymphoproliferative syndrome 2 6,445,520(-) G/A MISSENSE_VARIANT
655342 Uncertain Significance: Lymphoproliferative syndrome 2 6,445,493(-) T/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for CD27-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CD27-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759876 CNV gain 17122850
esv34325 CNV gain 17911159
esv34390 CNV gain 17911159
esv3628406 CNV gain 21293372
nsv442252 CNV gain 18776908
nsv818881 CNV gain 17921354
nsv8894 CNV gain 18304495
nsv975437 CNV duplication 23825009

Additional Variant Information for CD27-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CD27-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CD27-AS1 Gene

Disorders for CD27-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CD27-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
lymphoproliferative syndrome 2
  • lpfs2
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CD27-AS1

genes like me logo Genes that share disorders with CD27-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CD27-AS1 Gene

Publications for CD27-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for CD27-AS1 Gene

Sources for CD27-AS1 Gene