Aliases for CCT6P4 Gene

Aliases for CCT6P4 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 4 2 3 5
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 4 2 3
  • CCT6-4P 3
  • CCT6P4 5

External Ids for CCT6P4 Gene

Previous GeneCards Identifiers for CCT6P4 Gene

  • GC00U922862
  • GC03P190433
  • GC03P187832

Summaries for CCT6P4 Gene

GeneCards Summary for CCT6P4 Gene

CCT6P4 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 4) is a Pseudogene.

Additional gene information for CCT6P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCT6P4 Gene

Genomics for CCT6P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCT6P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J190718 Enhancer 0.6 Ensembl ENCODE 0.7 +4.1 4111 1.3 JUND JUN FOS CUX1 CTCF RAD21 CCT6P4 lnc-GMNC-2 GMNC IL1RAP
GH03J190701 Enhancer 0.8 ENCODE 0.4 -13.5 -13482 0.1 CEBPG GATAD2A CTCF SOX13 NFKBIZ PRDM1 RXRB RAD21 IRF2 SP1 LINC02013 IL1RAP CCT6P4 GMNC
GH03J190702 Enhancer 0.8 Ensembl 0.4 -13.2 -13209 0.2 CEBPG SOX13 NFKBIZ PRDM1 RXRB IRF2 CTCF SP1 CEBPA ZKSCAN8 IL1RAP LINC02013 CCT6P4 GMNC
GH03J190728 Enhancer 0.6 Ensembl 0.4 +14.2 14211 0.6 FOXA1 SP1 CEBPA CEBPB FOXA2 ATF3 YY1 ZBTB33 JUND RAD21 IL1RAP CLDN1 CLDN16 CCT6P4 lnc-GMNC-2 GMNC
GH03J190710 Enhancer 0.2 Ensembl 0.7 -3.8 -3808 0.2 CCT6P4 LINC02013 GMNC IL1RAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCT6P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCT6P4 Gene

Genomic Locations for CCT6P4 Gene
chr3:190,714,709-190,717,373
(GRCh38/hg38)
Size:
2,665 bases
Orientation:
Plus strand
chr3:190,432,497-190,435,166
(GRCh37/hg19)
Size:
2,670 bases
Orientation:
Plus strand

Genomic View for CCT6P4 Gene

Genes around CCT6P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCT6P4 Gene

Proteins for CCT6P4 Gene

Post-translational modifications for CCT6P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P4 Gene

Domains & Families for CCT6P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCT6P4 Gene

Function for CCT6P4 Gene

Phenotypes From GWAS Catalog for CCT6P4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCT6P4 Gene

Localization for CCT6P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCT6P4 Gene

Pathways & Interactions for CCT6P4 Gene

PathCards logo

SuperPathways for CCT6P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCT6P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCT6P4 Gene

Drugs & Compounds for CCT6P4 Gene

No Compound Related Data Available

Transcripts for CCT6P4 Gene

mRNA/cDNA for CCT6P4 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P4 Gene

No ASD Table

Relevant External Links for CCT6P4 Gene

GeneLoc Exon Structure for
CCT6P4

Expression for CCT6P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCT6P4 Gene

mRNA differential expression in normal tissues according to GTEx for CCT6P4 Gene

This gene is overexpressed in Testis (x36.7), Brain - Frontal Cortex (BA9) (x8.2), and Brain - Cortex (x8.0).
genes like me logo Genes that share expression patterns with CCT6P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT6P4 Gene

Orthologs for CCT6P4 Gene

Evolution for CCT6P4 Gene

ENSEMBL:
Gene Tree for CCT6P4 (if available)
TreeFam:
Gene Tree for CCT6P4 (if available)

No data available for Orthologs for CCT6P4 Gene

Paralogs for CCT6P4 Gene

No data available for Paralogs for CCT6P4 Gene

Variants for CCT6P4 Gene

Additional Variant Information for CCT6P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT6P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCT6P4 Gene

Disorders for CCT6P4 Gene

Additional Disease Information for CCT6P4

Genetic Association Database
(GAD)

No disorders were found for CCT6P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCT6P4 Gene

Publications for CCT6P4 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K … Brocchieri L (BMC evolutionary biology 2010) 3
  2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 41

Products for CCT6P4 Gene

Sources for CCT6P4 Gene