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Aliases for CCT6P3 Gene

Aliases for CCT6P3 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 3 2 3 5
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 3 2 3
  • CCT6-3P 3

External Ids for CCT6P3 Gene

Previous GeneCards Identifiers for CCT6P3 Gene

  • GC00U923137
  • GC07P064525
  • GC07P063836
  • GC07P064503
  • GC07P064506
  • GC07P064509
  • GC07P064513
  • GC07P064516
  • GC07P064517
  • GC07P064521
  • GC07P065040
  • GC07P065042
  • GC07P065044
  • GC07P065046
  • GC07P065048
  • GC07P065050
  • GC07P065052

Summaries for CCT6P3 Gene

GeneCards Summary for CCT6P3 Gene

CCT6P3 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 3) is a Pseudogene.

Additional gene information for CCT6P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P3 Gene

Genomics for CCT6P3 Gene

GeneHancer (GH) Regulatory Elements for CCT6P3 Gene

Promoters and enhancers for CCT6P3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I065037 Promoter/Enhancer 1.3 Ensembl ENCODE 582.7 +0.8 765 2.9 HDAC1 TAF9B RB1 NFRKB KLF17 SIN3A YY1 ZNF335 POLR2B EGR1 CCT6P3 LOC441241 LOC105375330 ENSG00000239985 GTF2IP14 INTS4P1 VKORC1L1 ZNF117 GC07P065067
GH07I064995 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 49.6 -36.5 -36469 11.8 MLX DMAP1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 ERV3-1 GTF2IP14 CCT6P3 INTS4P1 ZNF117 CCT6P1 VKORC1L1 ZNF736 ENSG00000227113 EEF1DP4
GH07I065239 Enhancer 1 Ensembl ENCODE 36 +201.5 201459 1.2 CTCF KLF1 SAP130 SIN3A ZIC2 ZNF48 ZNF335 ZFHX2 GLIS2 POLR2A GTF2IP14 CCT6P3 ZNF117 ENSG00000237026 ENSG00000229064
GH07I065268 Promoter/Enhancer 1.4 Ensembl ENCODE 24.5 +231.1 231119 1.5 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 GLIS2 E2F8 SP3 LOC105375334 GTF2IP14 CCT6P3 ZNF117 LOC100419781
GH07I065251 Enhancer 1.1 Ensembl ENCODE 27.6 +213.9 213934 1.5 PKNOX1 ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF213 KLF7 ATF7 KLF13 GTF2IP14 CCT6P3 ZNF117 CRCP ENSG00000229064 CLUHP7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCT6P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCT6P3 Gene

Genomic Locations for CCT6P3 Gene
36,360 bases
Plus strand

Genomic View for CCT6P3 Gene

Genes around CCT6P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCT6P3 Gene

Proteins for CCT6P3 Gene

Post-translational modifications for CCT6P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P3 Gene

Domains & Families for CCT6P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P3 Gene

Function for CCT6P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCT6P3 Gene

Localization for CCT6P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCT6P3 Gene

Pathways & Interactions for CCT6P3 Gene

SuperPathways for CCT6P3 Gene

No Data Available

Interacting Proteins for CCT6P3 Gene

Gene Ontology (GO) - Biological Process for CCT6P3 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCT6P3 Gene

Drugs & Compounds for CCT6P3 Gene

No Compound Related Data Available

Transcripts for CCT6P3 Gene

mRNA/cDNA for CCT6P3 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCT6P3 Gene

Chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P3 Gene

No ASD Table

Relevant External Links for CCT6P3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCT6P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCT6P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCT6P3 Gene:


SOURCE GeneReport for Unigene cluster for CCT6P3 Gene:

genes like me logo Genes that share expression patterns with CCT6P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT6P3 Gene

Orthologs for CCT6P3 Gene

Evolution for CCT6P3 Gene

Gene Tree for CCT6P3 (if available)
Gene Tree for CCT6P3 (if available)

No data available for Orthologs for CCT6P3 Gene

Paralogs for CCT6P3 Gene

No data available for Paralogs for CCT6P3 Gene

Variants for CCT6P3 Gene

Sequence variations from dbSNP and Humsavar for CCT6P3 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000138618 -- 65,050,108(+) G/A intron_variant
rs1000515971 -- 65,037,281(+) A/G upstream_transcript_variant
rs1000717921 -- 65,042,664(+) C/T intron_variant
rs1000958541 -- 65,063,977(+) G/C intron_variant
rs1000970552 -- 65,070,448(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CCT6P3 Gene

Variant ID Type Subtype PubMed ID
dgv1099e201 CNV deletion 23290073
dgv226e55 CNV loss 17911159
dgv227e55 CNV loss 17911159
esv24002 CNV gain+loss 19812545
esv2422405 CNV duplication 17116639
esv2673701 CNV deletion 23128226
esv27838 CNV loss 19812545
esv3613433 CNV loss 21293372
esv3613434 CNV loss 21293372
nsv1019180 CNV loss 25217958
nsv1022042 CNV gain 25217958
nsv1029796 CNV gain 25217958
nsv464518 CNV gain 19166990
nsv517778 CNV gain+loss 19592680
nsv607312 CNV gain 21841781
nsv966821 CNV duplication 23825009
nsv981498 CNV duplication 23825009

Additional Variant Information for CCT6P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCT6P3 Gene

Disorders for CCT6P3 Gene

Additional Disease Information for CCT6P3

No disorders were found for CCT6P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCT6P3 Gene

Publications for CCT6P3 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K … Brocchieri L (BMC evolutionary biology 2010) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for CCT6P3 Gene

Sources for CCT6P3 Gene

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