Aliases for CCNYL3 Gene

Aliases for CCNYL3 Gene

  • Cyclin Y Like 3 (Pseudogene) 2 3 5
  • Putative Cyclin-Y-Like Protein 3 3 4
  • Cyclin Y Like 3 2
  • CCNYL3 5

External Ids for CCNYL3 Gene

Previous GeneCards Identifiers for CCNYL3 Gene

  • GC16P034116
  • GC16P034266
  • GC16P035216
  • GC16P035245
  • GC16P035447
  • GC16P035477
  • GC16P035505
  • GC16P035657
  • GC16P035267
  • GC16P035288
  • GC16P035309
  • GC16P035333
  • GC16P035357
  • GC16P035381
  • GC16P035402
  • GC16P035419
  • GC16P035774
  • GC16P035915

Summaries for CCNYL3 Gene

GeneCards Summary for CCNYL3 Gene

CCNYL3 (Cyclin Y Like 3 (Pseudogene)) is a Pseudogene.

Additional gene information for CCNYL3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCNYL3 Gene

Genomics for CCNYL3 Gene

GeneHancer (GH) Regulatory Elements Pubs


Top Transcription factor binding sites by QIAGEN in the CCNYL3 gene promoter:
  • AML1a
  • FOXJ2
  • FOXJ2 (long isoform)
  • GR
  • GR-alpha
  • GR-beta
  • HOXA9
  • HOXA9B
  • Meis-1
  • Meis-1b

Genomic Locations for CCNYL3 Gene

Latest Assembly
chr16:35,030,349-35,084,313
(GRCh38/hg38)
Size:
53,965 bases
Orientation:
Plus strand

Previous Assembly
chr16:34,264,720-34,294,699
(GRCh37/hg19 by Entrez Gene)
Size:
29,980 bases
Orientation:
Plus strand

chr16:34,262,756-34,318,684
(GRCh37/hg19 by Ensembl)
Size:
55,929 bases
Orientation:
Plus strand

Genomic View for CCNYL3 Gene

Genes around CCNYL3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCNYL3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNYL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNYL3 Gene

Proteins for CCNYL3 Gene

  • Protein details for CCNYL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7X3-CCYL3_HUMAN
    Recommended name:
    Putative cyclin-Y-like protein 3
    Protein Accession:
    P0C7X3
    Secondary Accessions:
    • B5MCU7

    Protein attributes for CCNYL3 Gene

    Size:
    344 amino acids
    Molecular mass:
    39078 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCNYL3 Gene

Post-translational modifications for CCNYL3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCNYL3 Gene

Domains & Families for CCNYL3 Gene

Gene Families for CCNYL3 Gene

HGNC:

Protein Domains for CCNYL3 Gene

Suggested Antigen Peptide Sequences for CCNYL3 Gene

GenScript: Design optimal peptide antigens:
  • Putative cyclin-Y-like protein 3 (CCYL3_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P0C7X3

UniProtKB/Swiss-Prot:

CCYL3_HUMAN :
  • Belongs to the cyclin family. Cyclin Y subfamily.
Family:
  • Belongs to the cyclin family. Cyclin Y subfamily.
genes like me logo Genes that share domains with CCNYL3: view

Function for CCNYL3 Gene

Gene Ontology (GO) - Molecular Function for CCNYL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IBA 21873635
genes like me logo Genes that share ontologies with CCNYL3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCNYL3 Gene

Localization for CCNYL3 Gene

Gene Ontology (GO) - Cellular Components for CCNYL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA 21873635
GO:0005886 plasma membrane IBA 21873635
genes like me logo Genes that share ontologies with CCNYL3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CCNYL3 Gene

Pathways & Interactions for CCNYL3 Gene

PathCards logo

SuperPathways for CCNYL3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCNYL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA 21873635
genes like me logo Genes that share ontologies with CCNYL3: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCNYL3 Gene

Drugs & Compounds for CCNYL3 Gene

No Compound Related Data Available

Transcripts for CCNYL3 Gene

mRNA/cDNA for CCNYL3 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCNYL3 Gene

No ASD Table

Relevant External Links for CCNYL3 Gene

GeneLoc Exon Structure for
CCNYL3

Expression for CCNYL3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCNYL3 Gene

mRNA differential expression in normal tissues according to GTEx for CCNYL3 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with CCNYL3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNYL3 Gene

Orthologs for CCNYL3 Gene

Evolution for CCNYL3 Gene

ENSEMBL:
Gene Tree for CCNYL3 (if available)
TreeFam:
Gene Tree for CCNYL3 (if available)
Alliance of Genome Resources:
Additional Orthologs for CCNYL3

No data available for Orthologs for CCNYL3 Gene

Paralogs for CCNYL3 Gene

(3) SIMAP similar genes for CCNYL3 Gene using alignment to 1 proteins:

  • CCYL3_HUMAN
genes like me logo Genes that share paralogs with CCNYL3: view

No data available for Paralogs for CCNYL3 Gene

Variants for CCNYL3 Gene

Additional Variant Information for CCNYL3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCNYL3
Leiden Open Variation Database (LOVD)
CCNYL3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCNYL3 Gene

Disorders for CCNYL3 Gene

No disorders were found for CCNYL3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCNYL3 Gene

Publications for CCNYL3 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for CCNYL3 Gene

Sources for CCNYL3 Gene