CCNYL2 Gene (Pseudogene)

Cyclin Y Like 2 (Pseudogene)

GC10M042463
GIFtS:
17

Aliases for CCNYL2 Gene

Aliases for CCNYL2 Gene

  • Cyclin Y Like 2 (Pseudogene) 2 3 5
  • Cyclin-Y-Like Protein 2 3 4
  • C10orf21 3 4
  • Chromosome 10 Open Reading Frame 21 2
  • Cyclin Y-Like 2 2
  • BA178A10.2 3
  • CCNYL2P 3

External Ids for CCNYL2 Gene

Previous HGNC Symbols for CCNYL2 Gene

  • C10orf21

Previous GeneCards Identifiers for CCNYL2 Gene

  • GC10M042225
  • GC10M042903
  • GC10M039430
  • GC10M042418
  • GC10M042421
  • GC10M042446
  • GC10M042449
  • GC10M042452
  • GC10M042423
  • GC10M042426
  • GC10M042429
  • GC10M042431
  • GC10M042434
  • GC10M042437
  • GC10M042440
  • GC10M042443

Summaries for CCNYL2 Gene

GeneCards Summary for CCNYL2 Gene

CCNYL2 (Cyclin Y Like 2 (Pseudogene)) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include protein kinase binding.

Additional gene information for CCNYL2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCNYL2 Gene

Genomics for CCNYL2 Gene

GeneHancer (GH) Regulatory Elements for CCNYL2 Gene

Promoters and enhancers for CCNYL2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J042474 Promoter/Enhancer 1.1 Ensembl ENCODE 500.7 -0.9 -938 2.6 ZIC2 ZNF423 MXI1 SP2 ZBTB17 POLR2A POLR2G USF1 MNT ZNF335 LINC00839 CCNYL2 ZNF33B ENSG00000215146 piR-54183
GH10J043043 Enhancer 0.7 Ensembl CraniofacialAtlas 4.9 -569.1 -569069 2 ZFX ZIC2 FOXA1 REST MYC GLIS1 MAX RAD21 LINC00839 CCNYL2 ENSG00000259869 HSALNG0077522 piR-32214-054
GH10J042826 Enhancer 0.6 Ensembl ENCODE 3.9 -352.1 -352088 1.5 CTCF RAD21 KLF1 HE856085 piR-49555-001 ENSG00000215146 CCNYL2 BMS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCNYL2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CCNYL2 gene promoter:
  • AML1a
  • AREB6
  • E47
  • FOXC1
  • p53
  • Pax-4a
  • Tal-1beta
  • USF-1:USF-2
  • USF1
  • USF2

Genomic Locations for CCNYL2 Gene

Genomic Locations for CCNYL2 Gene
chr10:42,408,168-42,475,349
(GRCh38/hg38)
Size:
67,182 bases
Orientation:
Minus strand
chr10:42,903,616-42,967,688
(GRCh37/hg19)
Size:
64,073 bases
Orientation:
Minus strand

Genomic View for CCNYL2 Gene

Genes around CCNYL2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCNYL2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNYL2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCNYL2 Gene

Proteins for CCNYL2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CCNYL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T2Q4-CCYL2_HUMAN
    Recommended name:
    Cyclin-Y-like protein 2
    Protein Accession:
    Q5T2Q4

    Protein attributes for CCNYL2 Gene

    Size:
    361 amino acids
    Molecular mass:
    41278 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCNYL2 Gene

Protein Expression for CCNYL2 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CCNYL2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCNYL2 Gene

Domains & Families for CCNYL2 Gene

Gene Families for CCNYL2 Gene

HGNC:

Protein Domains for CCNYL2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCNYL2 Gene

GenScript: Design optimal peptide antigens:
  • Cyclin-Y-like protein 2 (CCYL2_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q5T2Q4

UniProtKB/Swiss-Prot:

CCYL2_HUMAN :
  • Belongs to the cyclin family. Cyclin Y subfamily.
Family:
  • Belongs to the cyclin family. Cyclin Y subfamily.
genes like me logo Genes that share domains with CCNYL2: view

Function for CCNYL2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CCNYL2 Gene

Gene Ontology (GO) - Molecular Function for CCNYL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IBA 21873635
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with CCNYL2: view
genes like me logo Genes that share phenotypes with CCNYL2: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCNYL2 Gene

Localization for CCNYL2 Gene

Gene Ontology (GO) - Cellular Components for CCNYL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IBA 21873635
genes like me logo Genes that share ontologies with CCNYL2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CCNYL2 Gene

Pathways & Interactions for CCNYL2 Gene

PathCards logo

SuperPathways for CCNYL2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CCNYL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA 21873635
genes like me logo Genes that share ontologies with CCNYL2: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCNYL2 Gene

Drugs & Compounds for CCNYL2 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for CCNYL2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CCNYL2 Gene

1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCNYL2 Gene

No ASD Table

Relevant External Links for CCNYL2 Gene

GeneLoc Exon Structure for
CCNYL2

Expression for CCNYL2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCNYL2 Gene

mRNA expression in normal human tissues for CCNYL2 Gene
mRNA expression by BioGPS for CCNYL2 GenemRNA expression by GTEx for CCNYL2 Gene

mRNA differential expression in normal tissues according to GTEx for CCNYL2 Gene

This gene is overexpressed in Testis (x25.8).

Protein differential expression in normal tissues from HIPED for CCNYL2 Gene

This gene is overexpressed in Pancreas (51.3) and Brain (17.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCNYL2 Gene



Protein tissue co-expression partners for CCNYL2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCNYL2

genes like me logo Genes that share expression patterns with CCNYL2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNYL2 Gene

Orthologs for CCNYL2 Gene

Evolution for CCNYL2 Gene

ENSEMBL:
Gene Tree for CCNYL2 (if available)
TreeFam:
Gene Tree for CCNYL2 (if available)

No data available for Orthologs for CCNYL2 Gene

Paralogs for CCNYL2 Gene

(8) SIMAP similar genes for CCNYL2 Gene using alignment to 1 proteins:

  • CCYL2_HUMAN
genes like me logo Genes that share paralogs with CCNYL2: view

No data available for Paralogs for CCNYL2 Gene

Variants for CCNYL2 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CCNYL2 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs2489720 - p.Arg176Gln
rs2490085 - p.Val57Glu
rs2505861 - p.Ile288Val

Structural Variations from Database of Genomic Variants (DGV) for CCNYL2 Gene

Variant ID Type Subtype PubMed ID
dgv1097n54 CNV gain 21841781
dgv1098n54 CNV gain 21841781
dgv1102n54 CNV gain 21841781
dgv1103n54 CNV gain 21841781
dgv113e214 CNV gain 21293372
dgv719n100 CNV gain 25217958
dgv78n27 CNV gain 19166990
dgv79n27 CNV gain 19166990
esv2328272 CNV deletion 18987734
esv2759746 CNV loss 17122850
esv3428772 CNV duplication 20981092
esv3576449 CNV gain 25503493
esv3623002 CNV gain 21293372
esv3623007 CNV loss 21293372
esv3623008 CNV gain 21293372
esv3623011 CNV loss 21293372
esv3891789 CNV gain 25118596
esv3891790 CNV gain 25118596
esv3891791 CNV gain 25118596
esv3891795 CNV gain 25118596
nsv1042764 CNV gain 25217958
nsv1051346 CNV gain 25217958
nsv1119805 CNV deletion 24896259
nsv433411 CNV gain 18776910
nsv466877 CNV gain 19166990
nsv469725 CNV gain 16826518
nsv470932 CNV gain 18288195
nsv471665 CNV gain 15918152
nsv550672 CNV gain 21841781
nsv550680 CNV loss 21841781
nsv825348 CNV loss 20364138
nsv947880 CNV duplication 23825009
nsv947881 CNV duplication 23825009

Additional Variant Information for CCNYL2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCNYL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Additional dbSNP identifiers (rs#s) and Variation tolerance for CCNYL2 Gene

Disorders for CCNYL2 Gene

Additional Disease Information for CCNYL2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for CCNYL2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCNYL2 Gene

Publications for CCNYL2 Gene

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3 54
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

ExternalLinks

View latest publications for CCNYL2 gene in Mastermind

Products for CCNYL2 Gene

Sources for CCNYL2 Gene