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Aliases for CCNYL1 Gene

Aliases for CCNYL1 Gene

  • Cyclin Y Like 1 2 3 5
  • Cyclin-Y-Like Protein 1 3
  • Cyclin Y-Like 1 2

External Ids for CCNYL1 Gene

Previous GeneCards Identifiers for CCNYL1 Gene

  • GC02P208285
  • GC02P208576
  • GC02P200418

Summaries for CCNYL1 Gene

GeneCards Summary for CCNYL1 Gene

CCNYL1 (Cyclin Y Like 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include protein kinase binding. An important paralog of this gene is CCNY.

Additional gene information for CCNYL1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNYL1 Gene

Genomics for CCNYL1 Gene

GeneHancer (GH) Regulatory Elements for CCNYL1 Gene

Promoters and enhancers for CCNYL1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J207710 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 +0.3 346 3 HDGF PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CCNYL1 ENSG00000272851
GH02J207631 Enhancer 1.1 Ensembl ENCODE 19.1 -78.9 -78857 2.6 PKNOX1 ATF1 NEUROD1 SIN3A ZFP91 FOS NFKBIZ KAT8 NFIL3 MAFF METTL21A CCNYL1 PPP1R14BP2 RNU6-664P ENSG00000200764 RPS29P9
GH02J207623 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 8 -85.9 -85856 4.2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF143 METTL21A CREB1 ENSG00000224342 LOC100533727 LOC100288663 ENSG00000231653 ENSG00000231896 PIKFYVE FASTKD2 CRYGC
GH02J207681 Promoter/Enhancer 1.7 Ensembl ENCODE 9.4 -28.4 -28377 3.9 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF2 ETS1 YY1 SLC30A9 ZNF121 PPP1R14BP2 PIKFYVE CREB1 CCNYL1 GC02P207688
GH02J207676 Enhancer 0.9 Ensembl ENCODE 16.5 -34.5 -34477 1.5 TEAD4 JUN BATF FOSL1 ZNF664 POLR2A STAT2 EED FOSL2 FOS CCNYL1 METTL21A FZD5 LINC01857 RNU6-664P GC02M207681 GC02M207673
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCNYL1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CCNYL1 gene promoter:

Genomic Locations for CCNYL1 Gene

Genomic Locations for CCNYL1 Gene
chr2:207,711,540-207,761,839
(GRCh38/hg38)
Size:
50,300 bases
Orientation:
Plus strand
chr2:208,576,264-208,626,563
(GRCh37/hg19)

Genomic View for CCNYL1 Gene

Genes around CCNYL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCNYL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNYL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNYL1 Gene

Proteins for CCNYL1 Gene

  • Protein details for CCNYL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7R7-CCYL1_HUMAN
    Recommended name:
    Cyclin-Y-like protein 1
    Protein Accession:
    Q8N7R7
    Secondary Accessions:
    • Q6NX60

    Protein attributes for CCNYL1 Gene

    Size:
    359 amino acids
    Molecular mass:
    40705 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH67253.1; Type=Frameshift; Positions=47; Evidence={ECO:0000305};

    Alternative splice isoforms for CCNYL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCNYL1 Gene

Post-translational modifications for CCNYL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCNYL1 Gene

No data available for DME Specific Peptides for CCNYL1 Gene

Domains & Families for CCNYL1 Gene

Gene Families for CCNYL1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCNYL1 Gene

Suggested Antigen Peptide Sequences for CCNYL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N7R7

UniProtKB/Swiss-Prot:

CCYL1_HUMAN :
  • Belongs to the cyclin family. Cyclin Y subfamily.
Family:
  • Belongs to the cyclin family. Cyclin Y subfamily.
genes like me logo Genes that share domains with CCNYL1: view

Function for CCNYL1 Gene

Phenotypes From GWAS Catalog for CCNYL1 Gene

Gene Ontology (GO) - Molecular Function for CCNYL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22184064
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IBA --
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with CCNYL1: view
genes like me logo Genes that share phenotypes with CCNYL1: view

Animal Models for CCNYL1 Gene

MGI Knock Outs for CCNYL1:
  • Ccnyl1 Ccnyl1<tm1a(EUCOMM)Wtsi>

Animal Model Products

miRNA for CCNYL1 Gene

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CCNYL1 Gene

Localization for CCNYL1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCNYL1 gene
Compartment Confidence
plasma membrane 2
extracellular 1
mitochondrion 1
peroxisome 1
nucleus 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CCNYL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA --
GO:0005886 plasma membrane IBA --
genes like me logo Genes that share ontologies with CCNYL1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCNYL1 Gene

Pathways & Interactions for CCNYL1 Gene

SuperPathways for CCNYL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCNYL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA --
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA --
genes like me logo Genes that share ontologies with CCNYL1: view

No data available for Pathways by source and SIGNOR curated interactions for CCNYL1 Gene

Drugs & Compounds for CCNYL1 Gene

No Compound Related Data Available

Transcripts for CCNYL1 Gene

mRNA/cDNA for CCNYL1 Gene

Unigene Clusters for CCNYL1 Gene

Cyclin Y-like 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCNYL1 Gene

No ASD Table

Relevant External Links for CCNYL1 Gene

GeneLoc Exon Structure for
CCNYL1
ECgene alternative splicing isoforms for
CCNYL1

Expression for CCNYL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCNYL1 Gene

Protein differential expression in normal tissues from HIPED for CCNYL1 Gene

This gene is overexpressed in Breast (21.9), Heart (18.8), Peripheral blood mononuclear cells (15.2), and Ovary (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CCNYL1 Gene



Protein tissue co-expression partners for CCNYL1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCNYL1 Gene:

CCNYL1

SOURCE GeneReport for Unigene cluster for CCNYL1 Gene:

Hs.471234

Evidence on tissue expression from TISSUES for CCNYL1 Gene

  • Liver(4.2)
  • Nervous system(3.9)
genes like me logo Genes that share expression patterns with CCNYL1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNYL1 Gene

Orthologs for CCNYL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CCNYL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCNYL1 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCNYL1 34 33
  • 95.73 (n)
OneToOne
cow
(Bos Taurus)
Mammalia CCNYL1 34 33
  • 94.81 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Ccnyl1 16 34 33
  • 94.46 (n)
rat
(Rattus norvegicus)
Mammalia Ccnyl1 33
  • 93.7 (n)
oppossum
(Monodelphis domestica)
Mammalia CCNYL1 34
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCNYL1 34
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCNYL1 34 33
  • 83.45 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCNYL1 34
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccnyl1 33
  • 80.39 (n)
Str.135 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.14028 33
zebrafish
(Danio rerio)
Actinopterygii ccnyl1 34 33
  • 74.63 (n)
OneToOne
wufi41h04 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.775 33
fruit fly
(Drosophila melanogaster)
Insecta CycY 34
  • 39 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea cyy-1 34
  • 39 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5028 34
  • 50 (a)
OneToMany
Cin.6853 33
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.6853 33
Species where no ortholog for CCNYL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CCNYL1 Gene

ENSEMBL:
Gene Tree for CCNYL1 (if available)
TreeFam:
Gene Tree for CCNYL1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for CCNYL1: view image

Paralogs for CCNYL1 Gene

Paralogs for CCNYL1 Gene

(6) SIMAP similar genes for CCNYL1 Gene using alignment to 4 proteins:

  • CCYL1_HUMAN
  • C9IYB8_HUMAN
  • H7BZD2_HUMAN
  • H7C0P7_HUMAN
genes like me logo Genes that share paralogs with CCNYL1: view

Variants for CCNYL1 Gene

Sequence variations from dbSNP and Humsavar for CCNYL1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000154338 -- 207,724,064(+) T/C/G intron_variant
rs1000179612 -- 207,740,983(+) C/A intron_variant
rs1000196925 -- 207,710,564(+) G/A/C upstream_transcript_variant
rs1000259394 -- 207,753,045(+) AAATAA/AA intron_variant
rs1000296213 -- 207,751,398(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCNYL1 Gene

Variant ID Type Subtype PubMed ID
nsv3133 CNV insertion 18451855
nsv963769 CNV duplication 23825009

Variation tolerance for CCNYL1 Gene

Residual Variation Intolerance Score: 43.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.26; 25.25% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CCNYL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCNYL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCNYL1 Gene

Disorders for CCNYL1 Gene

Additional Disease Information for CCNYL1

No disorders were found for CCNYL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCNYL1 Gene

Publications for CCNYL1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  3. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 58
  4. Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. (PMID: 25852190) So J … Colwill K (Science signaling 2015) 3 58
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58

Products for CCNYL1 Gene

Sources for CCNYL1 Gene

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