Aliases for CCNT2-AS1 Gene

Data sources for CCNT2-AS1 Gene:

Subcategory (RNA class) for CCNT2-AS1 Gene

lncRNA

Aliases for CCNT2-AS1 Gene

External Ids for CCNT2-AS1 Gene

Previous GeneCards Identifiers for CCNT2-AS1 Gene

  • GC02M135495

Summaries for CCNT2-AS1 Gene

GeneCards Summary for CCNT2-AS1 Gene

CCNT2-AS1 (CCNT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CCNT2-AS1 include Glioma Susceptibility 1.

Additional gene information for CCNT2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCNT2-AS1 Gene

Genomics for CCNT2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCNT2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J134916 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 250.3 +24.7 24744 4.9 TBP MXD4 SP1 CEBPA SIX5 NR2C1 MNT IKZF1 SMAD5 ETS1 CCNT2 CCNT2-AS1 UBXN4 MCM6 TMEM163 MAP3K19
GH02J134942 Enhancer 0.6 Ensembl ENCODE 250.7 +0.1 94 2.4 RBM22 IKZF1 ATF7 IKZF2 RELB CCNT2-AS1 HSALNG0019041 CCNT2 TMEM163 G3BP1P1 MAP3K19
GH02J134450 Enhancer 1.1 Ensembl ENCODE 10.3 +493.1 493115 0.8 MXD4 CEBPA DEK ZNF217 CTCF HOMEZ THAP11 REST ZNF511 IRF4 lnc-TMEM163-2 lnc-MGAT5-3 piR-39798 CCNT2 CCNT2-AS1 MGAT5 TMEM163
GH02J134460 Enhancer 0.8 Ensembl ENCODE 10.7 +482.7 482694 2 CTCF SIN3A REST SMAD4 MIER3 SMC3 RAD21 RFX5 TEAD3 YY1 TMEM163 CCNT2 CCNT2-AS1 piR-39798 lnc-MAP3K19-5 MGAT5
GH02J134451 Enhancer 0.9 Ensembl 10.3 +492.6 492595 0.2 MXD4 ZNF217 CTCF HOMEZ THAP11 ZNF511 IRF4 SMAD4 SAP130 MIER3 lnc-TMEM163-2 lnc-MGAT5-3 piR-39798 CCNT2 CCNT2-AS1 MGAT5 TMEM163
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCNT2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCNT2-AS1 Gene

Latest Assembly
chr2:134,735,463-134,943,895
(GRCh38/hg38)
Size:
208,433 bases
Orientation:
Minus strand

Previous Assembly
chr2:135,624,203-135,676,176
(GRCh37/hg19 by Entrez Gene)
Size:
51,974 bases
Orientation:
Minus strand

chr2:135,493,034-135,676,280
(GRCh37/hg19 by Ensembl)
Size:
183,247 bases
Orientation:
Minus strand

Genomic View for CCNT2-AS1 Gene

Genes around CCNT2-AS1 on UCSC Golden Path with GeneCards custom track
CCNT2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CCNT2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNT2-AS1 Gene

Proteins for CCNT2-AS1 Gene

Post-translational modifications for CCNT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCNT2-AS1 Gene

Domains & Families for CCNT2-AS1 Gene

Gene Families for CCNT2-AS1 Gene

genes like me logo Genes that share domains with CCNT2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCNT2-AS1 Gene

Function for CCNT2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCNT2-AS1 Gene

Localization for CCNT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCNT2-AS1 Gene

Pathways & Interactions for CCNT2-AS1 Gene

PathCards logo

SuperPathways for CCNT2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCNT2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCNT2-AS1 Gene

Drugs & Compounds for CCNT2-AS1 Gene

No Compound Related Data Available

Transcripts for CCNT2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CCNT2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D947B_9606 lncRNA 548 4

Ensembl: ENST00000392929 (view in UCSC) ,

LncBook: HSALNT0040179,

LNCipedia: CCNT2-AS1:8,

NONCODE: NONHSAT074567.2,

URS000033E1CD_9606 lncRNA 639 3

Ensembl: ENST00000413962 (view in UCSC) ,

LNCipedia: CCNT2-AS1:7,

NONCODE: NONHSAT074578.2,

URS0000EEC262_9606 lncRNA 3510 1

Ensembl: ENST00000428857 (view in UCSC) ,

URS000075EB2B_9606 lncRNA 1405 1

RefSeq: NR_036549,

URS0000EF2E80_9606 lncRNA 1150 1

Ensembl: ENST00000668300 (view in UCSC) ,

CCNT2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CCNT2-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CCNT2-AS1 Gene

No ASD Table

Relevant External Links for CCNT2-AS1 Gene

GeneLoc Exon Structure for
CCNT2-AS1

Expression for CCNT2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCNT2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCNT2-AS1 Gene

This gene is overexpressed in Liver (x6.6) and Kidney - Cortex (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCNT2-AS1

genes like me logo Genes that share expression patterns with CCNT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNT2-AS1 Gene

Orthologs for CCNT2-AS1 Gene

Evolution for CCNT2-AS1 Gene

ENSEMBL:
Gene Tree for CCNT2-AS1 (if available)
TreeFam:
Gene Tree for CCNT2-AS1 (if available)

No data available for Orthologs for CCNT2-AS1 Gene

Paralogs for CCNT2-AS1 Gene

No data available for Paralogs for CCNT2-AS1 Gene

Variants for CCNT2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CCNT2-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
931507 Uncertain Significance: See cases 134,872,455(-) G/T
NM_138326.3(ACMSD):c.677-14G>T
INTRON
rs1338555071 Likely Benign: not provided 134,898,332(-) G/GT
NM_138326.3(ACMSD):c.850-3dup
INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CCNT2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CCNT2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3303881 CNV mobile element insertion 20981092
esv3345789 CNV insertion 20981092
nsv476729 CNV novel sequence insertion 20440878

Additional Variant Information for CCNT2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCNT2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCNT2-AS1 Gene

Disorders for CCNT2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CCNT2-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CCNT2-AS1

genes like me logo Genes that share disorders with CCNT2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCNT2-AS1 Gene

Publications for CCNT2-AS1 Gene

  1. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 74
  2. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin SY … Soranzo N (Nature genetics 2014) 3

Products for CCNT2-AS1 Gene

Sources for CCNT2-AS1 Gene