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Aliases for CCNT2-AS1 Gene

Subcategory (RNA class) for CCNT2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CCNT2-AS1 Gene

  • CCNT2 Antisense RNA 1 2 3 5

External Ids for CCNT2-AS1 Gene

Previous GeneCards Identifiers for CCNT2-AS1 Gene

  • GC02M135495

Summaries for CCNT2-AS1 Gene

GeneCards Summary for CCNT2-AS1 Gene

CCNT2-AS1 (CCNT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCNT2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNT2-AS1 Gene

Genomics for CCNT2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCNT2-AS1 Gene

Promoters and enhancers for CCNT2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J134916 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.2 -156 4.3 HDGF FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CCNT2 CCNT2-AS1 MCM6 UBXN4 TMEM163 MAP3K19
GH02J134450 Enhancer 0.9 ENCODE 10.3 +467.7 467675 0.2 HDGF ARID4B ZNF2 IRF4 ZNF48 GTF3C2 ARID2 ZNF143 DEK RXRA GC02P134449 PIR62843 CCNT2 CCNT2-AS1 MGAT5
GH02J134942 Enhancer 0.7 Ensembl ENCODE 11.7 -24.8 -24835 1.4 IKZF1 ATF7 EBF1 MEF2B IKZF2 CCNT2 CCNT2-AS1 TMEM163 MAP3K19
GH02J134460 Enhancer 0.7 ENCODE 10.8 +458.0 457985 0.2 ELF3 CTCF IRF2 ZNF792 SIN3A ERF ZNF48 RAD21 ZKSCAN1 TEAD3 CCNT2 CCNT2-AS1 PIR62843 GC02M134460 TMEM163
GH02J134955 Enhancer 0.4 UCNEbase 11.2 -36.4 -36424 0.2 CCNT2 CCNT2-AS1 MAP3K19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCNT2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCNT2-AS1 Gene

Genomic Locations for CCNT2-AS1 Gene
chr2:134,735,464-134,918,710
(GRCh38/hg38)
Size:
183,247 bases
Orientation:
Minus strand
chr2:135,493,034-135,676,280
(GRCh37/hg19)
Size:
183,247 bases
Orientation:
Minus strand

Genomic View for CCNT2-AS1 Gene

Genes around CCNT2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCNT2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNT2-AS1 Gene

Proteins for CCNT2-AS1 Gene

Post-translational modifications for CCNT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCNT2-AS1 Gene

Domains & Families for CCNT2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCNT2-AS1 Gene

Function for CCNT2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCNT2-AS1 Gene

Localization for CCNT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCNT2-AS1 Gene

Pathways & Interactions for CCNT2-AS1 Gene

SuperPathways for CCNT2-AS1 Gene

No Data Available

Interacting Proteins for CCNT2-AS1 Gene

Gene Ontology (GO) - Biological Process for CCNT2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCNT2-AS1 Gene

Drugs & Compounds for CCNT2-AS1 Gene

No Compound Related Data Available

Transcripts for CCNT2-AS1 Gene

mRNA/cDNA for CCNT2-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CCNT2-AS1 Gene

No ASD Table

Relevant External Links for CCNT2-AS1 Gene

GeneLoc Exon Structure for
CCNT2-AS1
ECgene alternative splicing isoforms for
CCNT2-AS1

Expression for CCNT2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCNT2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCNT2-AS1 Gene

This gene is overexpressed in Liver (x6.6) and Kidney - Cortex (x4.9).
genes like me logo Genes that share expression patterns with CCNT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNT2-AS1 Gene

Orthologs for CCNT2-AS1 Gene

Evolution for CCNT2-AS1 Gene

ENSEMBL:
Gene Tree for CCNT2-AS1 (if available)
TreeFam:
Gene Tree for CCNT2-AS1 (if available)

No data available for Orthologs for CCNT2-AS1 Gene

Paralogs for CCNT2-AS1 Gene

No data available for Paralogs for CCNT2-AS1 Gene

Variants for CCNT2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCNT2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000053825 -- 134,867,484(-) T/C non_coding_transcript_variant
rs1000218835 -- 134,906,736(-) A/G intron_variant
rs1000231600 -- 134,879,394(-) C/T intron_variant
rs1000256834 -- 134,902,297(-) G/A intron_variant
rs1000283558 -- 134,915,423(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCNT2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3303881 CNV mobile element insertion 20981092
esv3345789 CNV insertion 20981092
nsv476729 CNV novel sequence insertion 20440878

Additional Variant Information for CCNT2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCNT2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCNT2-AS1 Gene

Disorders for CCNT2-AS1 Gene

Additional Disease Information for CCNT2-AS1

No disorders were found for CCNT2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCNT2-AS1 Gene

Publications for CCNT2-AS1 Gene

  1. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin SY … Soranzo N (Nature genetics 2014) 3 58

Products for CCNT2-AS1 Gene

Sources for CCNT2-AS1 Gene

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