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Aliases for CCND2-AS1 Gene

Subcategory (RNA class) for CCND2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CCND2-AS1 Gene

  • CCND2 Antisense RNA 1 2 3 5
  • CCND2 Antisense RNA 2 2 3
  • CCND2-AS2 3

External Ids for CCND2-AS1 Gene

Previous HGNC Symbols for CCND2-AS1 Gene

  • CCND2-AS2

Previous GeneCards Identifiers for CCND2-AS1 Gene

  • GC00U934680

Summaries for CCND2-AS1 Gene

GeneCards Summary for CCND2-AS1 Gene

CCND2-AS1 (CCND2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CCND2-AS1 include Thyroid Cancer, Nonmedullary, 1 and Glioma.

Additional gene information for CCND2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCND2-AS1 Gene

Genomics for CCND2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCND2-AS1 Gene

Promoters and enhancers for CCND2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J004268 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.1 1057 13.5 SP1 ELF3 CC2D1A CTCF ZNF148 NKRF ZNF121 CEBPG POLR2A GTF2F1 CCND2 CCND2-AS1 ENSG00000285901 GC12P006055 PARP11 C12orf4 TIGAR
GH12J004023 Promoter/Enhancer 1.3 Ensembl ENCODE 10.8 +250.6 250583 5.2 SP1 ELF3 RXRA ZIC2 GATAD2A RXRB RCOR2 PKNOX1 IRF2 MNT CCND2-AS1 CCND2 ENSG00000256969 HSPA8P5 ENSG00000242444
GH12J004030 Enhancer 1.2 FANTOM5 ENCODE 11.5 +243.7 243742 4.2 SP1 ZNF384 YY1 PRDM1 FOSL2 GLIS2 RXRA ZBTB8A LEF1 PRDM10 CCND2 CCND2-AS1 ENSG00000256969 HSPA8P5 ENSG00000242444 PARP11
GH12J004164 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11.3 +111.2 111205 1.7 ZNF687 GLIS2 POLR2A IKZF2 ZNF692 ZBTB20 DPF2 EED IKZF1 HDGF CCND2 CCND2-AS1 GC12P006210 LOC105369612
GH12J004214 Enhancer 1 FANTOM5 ENCODE 11.9 +60.2 60245 2.2 ZNF687 RELA CREM IKZF1 ZBTB33 BACH1 IKZF2 POLR2A TRIM22 HDAC1 CCND2 CCND2-AS1 PARP11 GC12P006219
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCND2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCND2-AS1 Gene

Genomic Locations for CCND2-AS1 Gene
chr12:4,248,765-4,276,184
(GRCh38/hg38)
Size:
27,420 bases
Orientation:
Minus strand

Genomic View for CCND2-AS1 Gene

Genes around CCND2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCND2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCND2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCND2-AS1 Gene

Proteins for CCND2-AS1 Gene

Post-translational modifications for CCND2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCND2-AS1 Gene

Domains & Families for CCND2-AS1 Gene

Gene Families for CCND2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCND2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCND2-AS1 Gene

Function for CCND2-AS1 Gene

Phenotypes From GWAS Catalog for CCND2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCND2-AS1 Gene

Localization for CCND2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCND2-AS1 Gene

Pathways & Interactions for CCND2-AS1 Gene

PathCards logo

SuperPathways for CCND2-AS1 Gene

No Data Available

Interacting Proteins for CCND2-AS1 Gene

Gene Ontology (GO) - Biological Process for CCND2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCND2-AS1 Gene

Drugs & Compounds for CCND2-AS1 Gene

No Compound Related Data Available

Transcripts for CCND2-AS1 Gene

mRNA/cDNA for CCND2-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CCND2-AS1 Gene

No ASD Table

Relevant External Links for CCND2-AS1 Gene

GeneLoc Exon Structure for
CCND2-AS1
ECgene alternative splicing isoforms for
CCND2-AS1

Expression for CCND2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCND2-AS1 Gene

Orthologs for CCND2-AS1 Gene

Evolution for CCND2-AS1 Gene

ENSEMBL:
Gene Tree for CCND2-AS1 (if available)
TreeFam:
Gene Tree for CCND2-AS1 (if available)

No data available for Orthologs for CCND2-AS1 Gene

Paralogs for CCND2-AS1 Gene

No data available for Paralogs for CCND2-AS1 Gene

Variants for CCND2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCND2-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs3217787 benign, not specified 4,274,005(-) G/A/T intron_variant
rs1000350320 -- 4,261,798(-) T/A intron_variant
rs1000472058 -- 4,273,785(-) G/C intron_variant
rs1000518282 -- 4,260,537(-) G/C intron_variant
rs1000667023 -- 4,269,279(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCND2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1040098 CNV gain 25217958
nsv1136148 CNV deletion 24896259
nsv473351 CNV novel sequence insertion 20440878
nsv483060 CNV loss 15286789
nsv520791 CNV loss 19592680
nsv832317 CNV gain 17160897

Additional Variant Information for CCND2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCND2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCND2-AS1 Gene

Disorders for CCND2-AS1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for CCND2-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
glioma
central nervous system cancer
  • central nervous system tumor
brain cancer
  • adult brain tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CCND2-AS1

genes like me logo Genes that share disorders with CCND2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCND2-AS1 Gene

Publications for CCND2-AS1 Gene

  1. Highly expressed lncRNA CCND2-AS1 promotes glioma cell proliferation through Wnt/β-catenin signaling. (PMID: 27923660) Zhang H … Sun YH (Biochemical and biophysical research communications 2017) 2 3 58
  2. LncRNA CCND2-AS1 promotes proliferation, migration, and invasion in papillary thyroid carcinoma. (PMID: 29366479) Xia E … Wang O (Biochemical and biophysical research communications 2018) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CCND2-AS1 Gene

Sources for CCND2-AS1 Gene

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