Aliases for CCND2-AS1 Gene

Subcategory (RNA class) for CCND2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CCND2-AS1 Gene

  • CCND2 Antisense RNA 1 2 3 5
  • CCND2-AS1 2 5 165
  • CCND2 Antisense RNA 2 2 3
  • NONHSAG010237.2 91
  • NONHSAG010238.2 91
  • HSALNG0088703 164
  • CCND2-AS2 3

External Ids for CCND2-AS1 Gene

Previous HGNC Symbols for CCND2-AS1 Gene

  • CCND2-AS2

Previous GeneCards Identifiers for CCND2-AS1 Gene

  • GC00U934680

Summaries for CCND2-AS1 Gene

GeneCards Summary for CCND2-AS1 Gene

CCND2-AS1 (CCND2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CCND2-AS1 include Thyroid Cancer, Nonmedullary, 1 and Glioma.

Additional gene information for CCND2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCND2-AS1 Gene

Genomics for CCND2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCND2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCND2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCND2-AS1 Gene

Genomic Locations for CCND2-AS1 Gene
chr12:4,247,981-4,276,252
(GRCh38/hg38)
Size:
28,272 bases
Orientation:
Minus strand

Genomic View for CCND2-AS1 Gene

Genes around CCND2-AS1 on UCSC Golden Path with GeneCards custom track
CCND2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CCND2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCND2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCND2-AS1 Gene

Proteins for CCND2-AS1 Gene

Post-translational modifications for CCND2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCND2-AS1 Gene

Domains & Families for CCND2-AS1 Gene

Gene Families for CCND2-AS1 Gene

genes like me logo Genes that share domains with CCND2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCND2-AS1 Gene

Function for CCND2-AS1 Gene

Phenotypes From GWAS Catalog for CCND2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCND2-AS1 Gene

Localization for CCND2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCND2-AS1 Gene

Pathways & Interactions for CCND2-AS1 Gene

PathCards logo

SuperPathways for CCND2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCND2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCND2-AS1 Gene

Drugs & Compounds for CCND2-AS1 Gene

No Compound Related Data Available

Transcripts for CCND2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CCND2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E3987_9606 lncRNA 553 4

HGNC: 49398,

RefSeq: NR_125790,

LncBook: HSALNT0184498,

LNCipedia: CCND2-AS1:2,

URS00003E32D1_9606 lncRNA 495 4

Ensembl: ENST00000537370 (view in UCSC) ,

LncBook: HSALNT0184499,

LNCipedia: CCND2-AS1:8,

NONCODE: NONHSAT025948.2,

URS000045FB50_9606 lncRNA 555 3

Ensembl: ENST00000539135 (view in UCSC) ,

LNCipedia: CCND2-AS1:1,

NONCODE: NONHSAT025947.2,

URS0000D63C5E_9606 lncRNA 2353 2

Ensembl: ENST00000646138 (view in UCSC) ,

LNCipedia: CCND2-AS1:4,

URS0000D644D5_9606 lncRNA 1499 2

Ensembl: ENST00000646245 (view in UCSC) ,

LNCipedia: CCND2-AS1:5,

CCND2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CCND2-AS1 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCND2-AS1 Gene

No ASD Table

Relevant External Links for CCND2-AS1 Gene

GeneLoc Exon Structure for
CCND2-AS1

Expression for CCND2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCND2-AS1 Gene

genes like me logo Genes that share expression patterns with CCND2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCND2-AS1 Gene

Orthologs for CCND2-AS1 Gene

Evolution for CCND2-AS1 Gene

ENSEMBL:
Gene Tree for CCND2-AS1 (if available)
TreeFam:
Gene Tree for CCND2-AS1 (if available)

No data available for Orthologs for CCND2-AS1 Gene

Paralogs for CCND2-AS1 Gene

No data available for Paralogs for CCND2-AS1 Gene

Variants for CCND2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CCND2-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
673833 Benign: not provided 4,273,433(-) A/G
678294 Benign: not provided 4,273,870(-) C/T FIVE_PRIME_UTR_VARIANT
774212 Likely Benign: not provided 4,275,998(-) A/C INTRON_VARIANT
rs3217787 Benign: not specified 4,274,005(-) G/T FIVE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for CCND2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CCND2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1040098 CNV gain 25217958
nsv1136148 CNV deletion 24896259
nsv473351 CNV novel sequence insertion 20440878
nsv483060 CNV loss 15286789
nsv520791 CNV loss 19592680
nsv832317 CNV gain 17160897

Additional Variant Information for CCND2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCND2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCND2-AS1 Gene

Disorders for CCND2-AS1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for CCND2-AS1 Gene - From: LncRNADisease and DISEASES

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CCND2-AS1

genes like me logo Genes that share disorders with CCND2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCND2-AS1 Gene

Publications for CCND2-AS1 Gene

  1. Highly expressed lncRNA CCND2-AS1 promotes glioma cell proliferation through Wnt/β-catenin signaling. (PMID: 27923660) Zhang H … Sun YH (Biochemical and biophysical research communications 2017) 2 3
  2. LncRNA CCND2-AS1 promotes proliferation, migration, and invasion in papillary thyroid carcinoma. (PMID: 29366479) Xia E … Wang O (Biochemical and biophysical research communications 2018) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for CCND2-AS1 Gene

Sources for CCND2-AS1 Gene