Aliases for CCM2L Gene

Aliases for CCM2L Gene

  • CCM2 Like Scaffold Protein 2 3 5
  • Cerebral Cavernous Malformations 2 Protein-Like 3 4
  • Cerebral Cavernous Malformation 2-Like 2 3
  • CCM2 Like Scaffolding Protein 2 3
  • C20orf160 3 4
  • CCM2-Like 3 4
  • Chromosome 20 Open Reading Frame 160 2
  • DJ310O13.5 3

External Ids for CCM2L Gene

Previous HGNC Symbols for CCM2L Gene

  • C20orf160

Previous GeneCards Identifiers for CCM2L Gene

  • GC20P030601

Summaries for CCM2L Gene

GeneCards Summary for CCM2L Gene

CCM2L (CCM2 Like Scaffold Protein) is a Protein Coding gene. Diseases associated with CCM2L include Cerebral Cavernous Malformations 2 and Cerebral Cavernous Malformations. An important paralog of this gene is CCM2.

Additional gene information for CCM2L Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCM2L Gene

Genomics for CCM2L Gene

GeneHancer (GH) Regulatory Elements for CCM2L Gene

Promoters and enhancers for CCM2L Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J032012 Promoter/Enhancer 1.2 EPDnew Ensembl dbSUPER 505.9 +0.7 722 2.2 POLR2A NR2F2 ZNF189 SMARCA4 ESRRA EGR2 ZNF121 KDM1A CCM2L MYLK2 XKR7 ENSG00000226239
GH20J031967 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -42.0 -41979 2.4 RXRA ZBTB40 SIN3A TEAD4 REST KDM6A ZBTB10 ZBTB11 GABPA AFF1 ENSG00000278012 PDRG1 XKR7 TTLL9 RSL24D1P6 DUSP15 ASXL1 RNA5SP481 CCM2L FOXS1
GH20J032039 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 16 +30.4 30354 1.7 ZNF217 NRF1 SP1 CTBP1 SIN3A ESRRA ELK1 TCF12 ZNF316 ZNF592 lnc-PDRG1-3 CCM2L TM9SF4 RNA5SP481 MYLK2 HCK PLAGL2 NOL4L lnc-PDRG1-2
GH20J031972 Enhancer 0.8 Ensembl ENCODE dbSUPER 15.7 -37.6 -37588 1.3 POLR2A GATA3 TCF7L2 ESR1 MAX ZKSCAN8 REST EZH2 XKR7 CCM2L RNA5SP481 RNU1-94P MYLK2 RNA5SP482 HCK TM9SF4 TTLL9 ENSG00000278012
GH20J031974 Enhancer 1 Ensembl ENCODE dbSUPER 11.5 -35.1 -35067 2.1 USF1 GABPA HDAC2 RBM25 POLR2A YY1 PHF8 TCF12 ZFHX2 BCOR XKR7 RNA5SP481 CCM2L RNU1-94P MYLK2 TM9SF4 TTLL9 ENSG00000278012 lnc-XKR7-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCM2L on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CCM2L

Genomic Locations for CCM2L Gene

Genomic Locations for CCM2L Gene
chr20:32,010,379-32,032,182
(GRCh38/hg38)
Size:
21,804 bases
Orientation:
Plus strand
chr20:30,598,245-30,619,984
(GRCh37/hg19)
Size:
21,740 bases
Orientation:
Plus strand

Genomic View for CCM2L Gene

Genes around CCM2L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCM2L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCM2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCM2L Gene

Proteins for CCM2L Gene

  • Protein details for CCM2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NUG4-CCM2L_HUMAN
    Recommended name:
    Cerebral cavernous malformations 2 protein-like
    Protein Accession:
    Q9NUG4
    Secondary Accessions:
    • Q5JYR9
    • Q8N5F1
    • Q8N6G8
    • Q96MD5

    Protein attributes for CCM2L Gene

    Size:
    571 amino acids
    Molecular mass:
    62179 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH32455.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCM2L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCM2L Gene

Post-translational modifications for CCM2L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCM2L Gene

No data available for DME Specific Peptides for CCM2L Gene

Domains & Families for CCM2L Gene

Gene Families for CCM2L Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for CCM2L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCM2L Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 20 open reading frame 160 (Q5JYR8_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9NUG4

UniProtKB/Swiss-Prot:

CCM2L_HUMAN :
  • Belongs to the CCM2 family.
Family:
  • Belongs to the CCM2 family.
genes like me logo Genes that share domains with CCM2L: view

Function for CCM2L Gene

Phenotypes From GWAS Catalog for CCM2L Gene

Gene Ontology (GO) - Molecular Function for CCM2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with CCM2L: view
genes like me logo Genes that share phenotypes with CCM2L: view

Animal Models for CCM2L Gene

MGI Knock Outs for CCM2L:

Animal Model Products

CRISPR Products

miRNA for CCM2L Gene

miRTarBase miRNAs that target CCM2L

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CCM2L

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CCM2L Gene

Localization for CCM2L Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCM2L gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
nucleus 1
cytosol 1
peroxisome 0

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for CCM2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with CCM2L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCM2L Gene

Pathways & Interactions for CCM2L Gene

PathCards logo

SuperPathways for CCM2L Gene

No Data Available

Interacting Proteins for CCM2L Gene

;

Gene Ontology (GO) - Biological Process for CCM2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003209 cardiac atrium morphogenesis IEA --
GO:0003222 ventricular trabecula myocardium morphogenesis IEA --
GO:0008150 biological_process ND --
GO:0032091 negative regulation of protein binding IEA --
GO:0034111 negative regulation of homotypic cell-cell adhesion IEA --
genes like me logo Genes that share ontologies with CCM2L: view

No data available for Pathways by source and SIGNOR curated interactions for CCM2L Gene

Drugs & Compounds for CCM2L Gene

No Compound Related Data Available

Transcripts for CCM2L Gene

mRNA/cDNA for CCM2L Gene

2 REFSEQ mRNAs :
8 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CCM2L

Alternative Splicing Database (ASD) splice patterns (SP) for CCM2L Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c · 11d
SP1: - - - - - - - -
SP2: - - -
SP3: -
SP4: -
SP5:

Relevant External Links for CCM2L Gene

GeneLoc Exon Structure for
CCM2L

Expression for CCM2L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCM2L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCM2L Gene

This gene is overexpressed in Spleen (x16.0).

Protein differential expression in normal tissues from HIPED for CCM2L Gene

This gene is overexpressed in Heart (38.4), Monocytes (23.8), and Adipocyte (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCM2L Gene



Protein tissue co-expression partners for CCM2L Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCM2L

SOURCE GeneReport for Unigene cluster for CCM2L Gene:

Hs.382151

Evidence on tissue expression from TISSUES for CCM2L Gene

  • Intestine(4.1)
genes like me logo Genes that share expression patterns with CCM2L: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCM2L Gene

Orthologs for CCM2L Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCM2L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCM2L 31 30
  • 99.41 (n)
OneToOne
cow
(Bos Taurus)
Mammalia CCM2L 31 30
  • 91.09 (n)
OneToOne
dog
(Canis familiaris)
Mammalia CCM2L 31 30
  • 90.98 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1305202 30
  • 86.89 (n)
mouse
(Mus musculus)
Mammalia Ccm2l 17 31 30
  • 86.48 (n)
oppossum
(Monodelphis domestica)
Mammalia CCM2L 31
  • 46 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCM2L 31
  • 3 (a)
OneToOne
chicken
(Gallus gallus)
Aves C20ORF160 30
  • 77.58 (n)
CCM2L 31
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCM2L 31
  • 63 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ccm2l 31 30
  • 69.53 (n)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 31
  • 24 (a)
OneToMany
Species where no ortholog for CCM2L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCM2L Gene

ENSEMBL:
Gene Tree for CCM2L (if available)
TreeFam:
Gene Tree for CCM2L (if available)
Aminode:
Evolutionary constrained regions (ECRs) for CCM2L: view image

Paralogs for CCM2L Gene

Paralogs for CCM2L Gene

(1) SIMAP similar genes for CCM2L Gene using alignment to 2 proteins:

  • CCM2L_HUMAN
  • Q5JYR8_HUMAN
genes like me logo Genes that share paralogs with CCM2L: view

Variants for CCM2L Gene

Additional dbSNP identifiers (rs#s) for CCM2L Gene

Structural Variations from Database of Genomic Variants (DGV) for CCM2L Gene

Variant ID Type Subtype PubMed ID
dgv4300n100 CNV gain 25217958
nsv1126593 CNV deletion 24896259
nsv833952 CNV gain 17160897
nsv833953 CNV loss 17160897

Variation tolerance for CCM2L Gene

Residual Variation Intolerance Score: 50.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.09; 50.89% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CCM2L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCM2L

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CCM2L Gene

Disorders for CCM2L Gene

MalaCards: The human disease database

(6) MalaCards diseases for CCM2L Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search CCM2L in MalaCards View complete list of genes associated with diseases

Additional Disease Information for CCM2L

genes like me logo Genes that share disorders with CCM2L: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCM2L Gene

Publications for CCM2L Gene

  1. Dynamic regulation of the cerebral cavernous malformation pathway controls vascular stability and growth. (PMID: 22898778) Zheng X … Kahn ML (Developmental cell 2012) 2 3 54
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 54
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54

Products for CCM2L Gene

Sources for CCM2L Gene