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Aliases for CCDC96 Gene

Aliases for CCDC96 Gene

  • Coiled-Coil Domain Containing 96 2 3 5
  • Coiled-Coil Domain-Containing Protein 96 3

External Ids for CCDC96 Gene

Previous GeneCards Identifiers for CCDC96 Gene

  • GC04M007093

Summaries for CCDC96 Gene

GeneCards Summary for CCDC96 Gene

CCDC96 (Coiled-Coil Domain Containing 96) is a Protein Coding gene.

Additional gene information for CCDC96 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC96 Gene

Genomics for CCDC96 Gene

GeneHancer (GH) Regulatory Elements for CCDC96 Gene

Promoters and enhancers for CCDC96 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J007041 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.5 -479 3.5 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A GLI4 ZNF48 YY1 GLIS2 CCDC96 TADA2B GRPEL1 LOC100129931
GH04J006961 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 5.4 +79.2 79206 4.2 SIN3A BMI1 BATF IRF4 RAD21 ZNF143 ETV6 BCLAF1 IKZF2 RUNX3 GRPEL1 TBC1D14 CCDC96 GC04P006943 GC04M006985
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC96 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CCDC96 gene promoter:
  • deltaCREB
  • CREB
  • GATA-1
  • Evi-1
  • SEF-1 (1)
  • Ik-2
  • TGIF
  • FOXO1
  • FOXO1a
  • FOXO4

Genomic Locations for CCDC96 Gene

Genomic Locations for CCDC96 Gene
2,153 bases
Minus strand
2,153 bases
Minus strand

Genomic View for CCDC96 Gene

Genes around CCDC96 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC96 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC96 Gene

Proteins for CCDC96 Gene

  • Protein details for CCDC96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 96
    Protein Accession:
    Secondary Accessions:
    • Q8N2I7

    Protein attributes for CCDC96 Gene

    555 amino acids
    Molecular mass:
    62711 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC96 Gene

Post-translational modifications for CCDC96 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC96 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC96 Gene

Domains & Families for CCDC96 Gene

Gene Families for CCDC96 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for CCDC96 Gene


Suggested Antigen Peptide Sequences for CCDC96 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC96: view

No data available for UniProtKB/Swiss-Prot for CCDC96 Gene

Function for CCDC96 Gene

Phenotypes From GWAS Catalog for CCDC96 Gene

genes like me logo Genes that share phenotypes with CCDC96: view

Animal Model Products

miRNA for CCDC96 Gene

miRTarBase miRNAs that target CCDC96

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC96 Gene

Localization for CCDC96 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC96 Gene

Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC96 gene
Compartment Confidence
cytoskeleton 3
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for CCDC96 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005815 microtubule organizing center IEA --
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with CCDC96: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for CCDC96 Gene

Pathways & Interactions for CCDC96 Gene

SuperPathways for CCDC96 Gene

No Data Available

Interacting Proteins for CCDC96 Gene

Gene Ontology (GO) - Biological Process for CCDC96 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC96 Gene

Drugs & Compounds for CCDC96 Gene

No Compound Related Data Available

Transcripts for CCDC96 Gene

mRNA/cDNA for CCDC96 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC96 Gene

Coiled-coil domain containing 96:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC96 Gene

No ASD Table

Relevant External Links for CCDC96 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC96 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC96 Gene

Protein differential expression in normal tissues from HIPED for CCDC96 Gene

This gene is overexpressed in Plasma (45.4) and Lymph node (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC96 Gene

Protein tissue co-expression partners for CCDC96 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC96 Gene:


SOURCE GeneReport for Unigene cluster for CCDC96 Gene:


Evidence on tissue expression from TISSUES for CCDC96 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with CCDC96: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC96 Gene

Orthologs for CCDC96 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC96 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCDC96 34 33
  • 98.32 (n)
(Canis familiaris)
Mammalia CCDC96 34 33
  • 83.91 (n)
(Bos Taurus)
Mammalia CCDC96 34 33
  • 82.37 (n)
(Mus musculus)
Mammalia Ccdc96 16 34 33
  • 76.74 (n)
(Rattus norvegicus)
Mammalia Ccdc96 33
  • 76.67 (n)
(Monodelphis domestica)
Mammalia CCDC96 34
  • 62 (a)
(Gallus gallus)
Aves CCDC96 34 33
  • 55.38 (n)
(Anolis carolinensis)
Reptilia CCDC96 34
  • 43 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.11474 33
(Danio rerio)
Actinopterygii ccdc96 34
  • 35 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 40 (a)
Cin.14252 33
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14252 33
Species where no ortholog for CCDC96 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC96 Gene

Gene Tree for CCDC96 (if available)
Gene Tree for CCDC96 (if available)
Evolutionary constrained regions (ECRs) for CCDC96: view image

Paralogs for CCDC96 Gene

No data available for Paralogs for CCDC96 Gene

Variants for CCDC96 Gene

Sequence variations from dbSNP and Humsavar for CCDC96 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000019212 -- 7,040,909(-) C/T 3_prime_UTR_variant
rs1000346404 -- 7,042,451(-) T/C coding_sequence_variant, missense_variant
rs1001641969 -- 7,043,021(-) C/T upstream_transcript_variant
rs1002654447 -- 7,044,775(-) C/T upstream_transcript_variant
rs1002792615 -- 7,043,949(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC96 Gene

Variant ID Type Subtype PubMed ID
dgv8941n54 CNV gain 21841781
esv26516 CNV loss 19812545
esv2759221 CNV gain 17122850
esv34033 CNV loss 18971310
esv34196 OTHER inversion 12058347
nsv4217 CNV deletion 18451855
nsv428436 CNV gain 18775914
nsv469847 CNV gain 16826518
nsv593548 CNV loss 21841781
nsv593549 CNV gain+loss 21841781
nsv593550 CNV gain 21841781
nsv593556 CNV gain 21841781

Variation tolerance for CCDC96 Gene

Residual Variation Intolerance Score: 30.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.49; 43.61% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CCDC96 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC96 Gene

Disorders for CCDC96 Gene

Additional Disease Information for CCDC96

No disorders were found for CCDC96 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC96 Gene

Publications for CCDC96 Gene

  1. Proteomic analysis of mammalian sperm cells identifies new components of the centrosome. (PMID: 25074808) Firat-Karalar EN … Stearns T (Journal of cell science 2014) 2 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CCDC96 Gene

Sources for CCDC96 Gene

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