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Aliases for CCDC92B Gene

Aliases for CCDC92B Gene

  • Coiled-Coil Domain Containing 92B 2 3 5

External Ids for CCDC92B Gene

Summaries for CCDC92B Gene

GeneCards Summary for CCDC92B Gene

CCDC92B (Coiled-Coil Domain Containing 92B) is a Protein Coding gene.

Additional gene information for CCDC92B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC92B Gene

Genomics for CCDC92B Gene

GeneHancer (GH) Regulatory Elements for CCDC92B Gene

Promoters and enhancers for CCDC92B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I002749 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 -0.3 -286 0.5 ARID4B SIN3A ZNF48 SLC30A9 ZNF143 KLF7 KLF13 DEK SP3 SP5 CCDC92B MIR1253 ENSG00000272920 GC17P002752
GH17I002723 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.1 25136 2.1 CTCF KLF1 MXI1 ZBTB6 MAX SIN3A ZIC2 BRCA1 ZNF48 E2F1 ENSG00000277200 LOC105371490 GC17M002738 CCDC92B
GH17I002751 Enhancer 0.4 ENCODE 0.8 -2.2 -2181 0.3 CTCF REST GC17P002752 CCDC92B
GH17I002745 Enhancer 0.2 ENCODE 0.8 +4.1 4090 0.2 CCDC92B ENSG00000272920 GC17M002738
GH17I002737 Enhancer 0.3 ENCODE 0.4 +12.4 12380 0.2 ZNF558 CLUH GC17M002738 ENSG00000277200 CCDC92B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC92B on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC92B Gene

Genomic Locations for CCDC92B Gene
chr17:2,724,411-2,749,562
(GRCh38/hg38)
Size:
25,152 bases
Orientation:
Minus strand
chr17:2,627,714-2,652,714
(GRCh37/hg19)

Genomic View for CCDC92B Gene

Genes around CCDC92B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC92B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC92B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC92B Gene

Proteins for CCDC92B Gene

Post-translational modifications for CCDC92B Gene

No Post-translational modifications

Other Protein References for CCDC92B Gene

No data available for DME Specific Peptides for CCDC92B Gene

Domains & Families for CCDC92B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC92B Gene

Function for CCDC92B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC92B Gene

Localization for CCDC92B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC92B Gene

Pathways & Interactions for CCDC92B Gene

SuperPathways for CCDC92B Gene

No Data Available

Interacting Proteins for CCDC92B Gene

Gene Ontology (GO) - Biological Process for CCDC92B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC92B Gene

Drugs & Compounds for CCDC92B Gene

No Compound Related Data Available

Transcripts for CCDC92B Gene

mRNA/cDNA for CCDC92B Gene

(3) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC92B Gene

No ASD Table

Relevant External Links for CCDC92B Gene

GeneLoc Exon Structure for
CCDC92B
ECgene alternative splicing isoforms for
CCDC92B

Expression for CCDC92B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of CCDC92B Gene:

CCDC92B
genes like me logo Genes that share expression patterns with CCDC92B: view

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC92B Gene

Orthologs for CCDC92B Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC92B Gene

Organism Taxonomy Gene Similarity Type Details
rat
(Rattus norvegicus)
Mammalia RGD1562276 33
  • 92.61 (n)
mouse
(Mus musculus)
Mammalia E130309D14Rik 33
  • 85.34 (n)
Ccdc92b 16
chicken
(Gallus gallus)
Aves LOC101751240 33
  • 75.8 (n)
Species where no ortholog for CCDC92B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC92B Gene

ENSEMBL:
Gene Tree for CCDC92B (if available)
TreeFam:
Gene Tree for CCDC92B (if available)

Paralogs for CCDC92B Gene

No data available for Paralogs for CCDC92B Gene

Variants for CCDC92B Gene

Sequence variations from dbSNP and Humsavar for CCDC92B Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000083920 -- 2,729,349(-) C/T intron_variant
rs1000194223 -- 2,747,951(-) T/C intron_variant
rs1000203930 -- 2,749,271(-) G/A/T upstream_transcript_variant
rs1000333422 -- 2,723,690(-) G/T 3_prime_UTR_variant
rs1000471006 -- 2,724,722(-) C/T coding_sequence_variant, missense_variant

Additional Variant Information for CCDC92B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC92B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC92B Gene

Disorders for CCDC92B Gene

No disorders were found for CCDC92B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC92B Gene

Publications for CCDC92B Gene

No publications were found for CCDC92B Gene.

Products for CCDC92B Gene

Sources for CCDC92B Gene

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