Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC39-AS1 Gene

Subcategory (RNA class) for CCDC39-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC39-AS1 Gene

  • CCDC39 Antisense RNA 1 2 3 5
  • CCDC39 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CCDC39-AS1 Gene

Previous GeneCards Identifiers for CCDC39-AS1 Gene

  • GC00U933332
  • GC03P180400

Summaries for CCDC39-AS1 Gene

GeneCards Summary for CCDC39-AS1 Gene

CCDC39-AS1 (CCDC39 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC39-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC39-AS1 Gene

Genomics for CCDC39-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC39-AS1 Gene

Promoters and enhancers for CCDC39-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I180678 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -0.4 -417 1.5 ELF3 ARID4B MZF1 SIN3A BMI1 RAD21 ZNF2 ZNF48 ZBTB40 ZNF335 CCDC39-AS1 CCDC39 GC03M180608
GH03I180718 Enhancer 1 VISTA UCNEbase 10.8 +39.3 39321 1.5 MAFF MAFK CCDC39-AS1 CCDC39 LOC647253 RN7SL229P LOC101928882
GH03I180706 Enhancer 0.3 FANTOM5 11 +26.1 26146 0.3 NR2F2 CCDC39-AS1 CCDC39 RN7SL229P
GH03I180708 Enhancer 0.3 ENCODE 11 +28.0 28044 0.2 POLR2A CCDC39-AS1 CCDC39 RN7SL229P LOC101928882
GH03I180633 Enhancer 0.3 FANTOM5 0.2 -46.2 -46224 0.3 CTCF GC03M180608 CCDC39-AS1 CCDC39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC39-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC39-AS1 Gene

Genomic Locations for CCDC39-AS1 Gene
chr3:180,680,084-180,700,449
(GRCh38/hg38)
Size:
20,366 bases
Orientation:
Plus strand
chr3:180,397,872-180,418,237
(GRCh37/hg19)

Genomic View for CCDC39-AS1 Gene

Genes around CCDC39-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC39-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC39-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CCDC39-AS1 Gene

Proteins for CCDC39-AS1 Gene

Post-translational modifications for CCDC39-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC39-AS1 Gene

Domains & Families for CCDC39-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC39-AS1 Gene

Function for CCDC39-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC39-AS1 Gene

Localization for CCDC39-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC39-AS1 Gene

Pathways & Interactions for CCDC39-AS1 Gene

SuperPathways for CCDC39-AS1 Gene

No Data Available

Interacting Proteins for CCDC39-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC39-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC39-AS1 Gene

Drugs & Compounds for CCDC39-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC39-AS1 Gene

mRNA/cDNA for CCDC39-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC39-AS1 Gene

No ASD Table

Relevant External Links for CCDC39-AS1 Gene

GeneLoc Exon Structure for
CCDC39-AS1
ECgene alternative splicing isoforms for
CCDC39-AS1

Expression for CCDC39-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC39-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC39-AS1 Gene

This gene is overexpressed in Testis (x9.0) and Ovary (x6.3).
genes like me logo Genes that share expression patterns with CCDC39-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC39-AS1 Gene

Orthologs for CCDC39-AS1 Gene

Evolution for CCDC39-AS1 Gene

ENSEMBL:
Gene Tree for CCDC39-AS1 (if available)
TreeFam:
Gene Tree for CCDC39-AS1 (if available)

No data available for Orthologs for CCDC39-AS1 Gene

Paralogs for CCDC39-AS1 Gene

No data available for Paralogs for CCDC39-AS1 Gene

Variants for CCDC39-AS1 Gene

Additional Variant Information for CCDC39-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC39-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC39-AS1 Gene

Disorders for CCDC39-AS1 Gene

No disorders were found for CCDC39-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC39-AS1 Gene

Publications for CCDC39-AS1 Gene

No publications were found for CCDC39-AS1 Gene.

Products for CCDC39-AS1 Gene

Sources for CCDC39-AS1 Gene

Content
Loading form....