Aliases for CCDC28A-AS1 Gene

Subcategory (RNA class) for CCDC28A-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CCDC28A-AS1 Gene

  • CCDC28A Antisense RNA 1 2 3 5
  • GVQW Motif-Containing Protein 2 3 4
  • GVQW Motif Containing 2 2 3
  • GVQW2 3 4
  • Putative Uncharacterized Protein CCDC28A-AS1 4
  • NONHSAG044977.2 91
  • NONHSAG044973.2 91
  • Protein GVQW2 3
  • HSALNG0053839 164
  • HSALNG0053832 164
  • CCDC28A-AS1 5
  • Lnc-GVQW2-1 165

External Ids for CCDC28A-AS1 Gene

Previous HGNC Symbols for CCDC28A-AS1 Gene

  • GVQW2

Summaries for CCDC28A-AS1 Gene

GeneCards Summary for CCDC28A-AS1 Gene

CCDC28A-AS1 (CCDC28A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. An important paralog of this gene is LOC101926982.

Additional gene information for CCDC28A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC28A-AS1 Gene

Genomics for CCDC28A-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCDC28A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J138772 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.1 102 2.4 BRCA1 SP1 CREB1 ATF7 PRDM10 REST ZNF629 RFX1 SIX5 POLR2A CCDC28A CCDC28A-AS1 ECT2L
GH06J138768 Enhancer 0.7 Ensembl ENCODE 0.7 +4.5 4502 1.6 PRDM10 IKZF2 YY1 EED RUNX3 NR2F2 JUNB IRF4 BATF SPI1 ECT2L CCDC28A CCDC28A-AS1 lnc-CCDC28A-2 NHSL1
GH06J138765 Enhancer 0.6 Ensembl 0.4 +7.7 7680 0.4 ZNF221 ARHGAP35 CTCF RXRB REST RAD21 TRIM22 RUNX3 SMC3 ZNF184 NHSL1 ENSG00000225177 lnc-CCDC28A-2 CCDC28A CCDC28A-AS1
GH06J138787 Enhancer 0.5 Ensembl 0.4 -13.4 -13398 1 CTCF PRDM10 ZNF316 MAFF MAFK MAFG EMSY ECT2L CCDC28A CCDC28A-AS1
GH06J138726 Enhancer 0.5 Ensembl 0.3 +46.3 46302 1.2 ZNF316 MAFG NR2F2 RXRA MAFK EMSY NHSL1 ENSG00000225177 lnc-CCDC28A-7 lnc-NHSL1-2 CCDC28A CCDC28A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC28A-AS1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CCDC28A-AS1

Genomic Locations for CCDC28A-AS1 Gene

Genomic Locations for CCDC28A-AS1 Gene
chr6:138,724,965-138,773,703
(GRCh38/hg38)
Size:
48,739 bases
Orientation:
Minus strand
chr6:139,046,348-139,094,816
(GRCh37/hg19)
Size:
48,469 bases
Orientation:
Minus strand

Genomic View for CCDC28A-AS1 Gene

Genes around CCDC28A-AS1 on UCSC Golden Path with GeneCards custom track
CCDC28A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CCDC28A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC28A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC28A-AS1 Gene

Proteins for CCDC28A-AS1 Gene

  • Protein details for CCDC28A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A096LPI5-GVQW2_HUMAN
    Recommended name:
    Putative uncharacterized protein CCDC28A-AS1
    Protein Accession:
    A0A096LPI5

    Protein attributes for CCDC28A-AS1 Gene

    Size:
    108 amino acids
    Molecular mass:
    11989 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC28A-AS1 Gene

Post-translational modifications for CCDC28A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC28A-AS1 Gene

Domains & Families for CCDC28A-AS1 Gene

Gene Families for CCDC28A-AS1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC28A-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with CCDC28A-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC28A-AS1 Gene

Function for CCDC28A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC28A-AS1 Gene

Localization for CCDC28A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC28A-AS1 Gene

Pathways & Interactions for CCDC28A-AS1 Gene

PathCards logo

SuperPathways for CCDC28A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC28A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCDC28A-AS1 Gene

Drugs & Compounds for CCDC28A-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC28A-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CCDC28A-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BF508_9606 lncRNA 2685 2

Ensembl: ENST00000624173 (view in UCSC) ,

LNCipedia: lnc-GVQW2-1:5,

URS0000E60A6D_9606 lncRNA 2732 1

RefSeq: NR_161203,

URS0000E60B00_9606 lncRNA 2590 1

RefSeq: NR_161205,

URS0000E60B2E_9606 lncRNA 2099 1

RefSeq: NR_161204,

URS0000BD62AD_9606 lncRNA 572 1

Ensembl: ENST00000615663 (view in UCSC) ,

CCDC28A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CCDC28A-AS1 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CCDC28A-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC28A-AS1 Gene

No ASD Table

Relevant External Links for CCDC28A-AS1 Gene

GeneLoc Exon Structure for
CCDC28A-AS1

Expression for CCDC28A-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCDC28A-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC28A-AS1 Gene

Orthologs for CCDC28A-AS1 Gene

Evolution for CCDC28A-AS1 Gene

ENSEMBL:
Gene Tree for CCDC28A-AS1 (if available)
TreeFam:
Gene Tree for CCDC28A-AS1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for CCDC28A-AS1: view image

No data available for Orthologs for CCDC28A-AS1 Gene

Paralogs for CCDC28A-AS1 Gene

Paralogs for CCDC28A-AS1 Gene

genes like me logo Genes that share paralogs with CCDC28A-AS1: view

Variants for CCDC28A-AS1 Gene

Additional dbSNP identifiers (rs#s) for CCDC28A-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CCDC28A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3540538 CNV deletion 23714750
esv3610962 CNV gain 21293372

Additional Variant Information for CCDC28A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC28A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CCDC28A-AS1 Gene

Disorders for CCDC28A-AS1 Gene

No disorders were found for CCDC28A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC28A-AS1 Gene

Publications for CCDC28A-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  3. Decoding the fine-scale structure of a breast cancer genome and transcriptome. (PMID: 16461635) Volik S … Collins C (Genome research 2006) 3
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4

Products for CCDC28A-AS1 Gene

Sources for CCDC28A-AS1 Gene