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Aliases for CCDC196 Gene

Aliases for CCDC196 Gene

  • Coiled-Coil Domain Containing 196 2 3 5
  • Long Intergenic Non-Protein Coding RNA 238 2 3 4
  • NCRNA00238 3 4
  • LINC00238 3 4
  • C14orf53 3 4
  • Putative Coiled-Coil Domain-Containing Protein 196 3
  • Chromosome 14 Open Reading Frame 53 2
  • Non-Protein Coding RNA 238 2

External Ids for CCDC196 Gene

Previous HGNC Symbols for CCDC196 Gene

  • C14orf53
  • NCRNA00238
  • LINC00238

Summaries for CCDC196 Gene

GeneCards Summary for CCDC196 Gene

CCDC196 (Coiled-Coil Domain Containing 196) is a Protein Coding gene.

Additional gene information for CCDC196 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC196 Gene

Genomics for CCDC196 Gene

GeneHancer (GH) Regulatory Elements for CCDC196 Gene

Promoters and enhancers for CCDC196 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I066395 Enhancer 0.5 ENCODE 0.4 -16.2 -16216 0.1 CTCF ELF1 RAD21 RUNX3 GPHN CCDC196 ENSG00000258561 GC14P066230
GH14I066483 Enhancer 0.7 ENCODE 0.2 +71.9 71854 0.2 FOXA2 MAX RAD21 YY1 RXRA NFIA HLF CBFA2T3 CEBPB REST ATP6V1D GPHN ENSG00000258561 CCDC196
GH14I066495 Enhancer 0.7 ENCODE 0.2 +84.0 83974 0.2 CTCF TAF1 ARID4B RAD21 YY1 ZNF316 ZNF143 SMC3 ZNF654 ZNF511 ENSG00000258561 GPHN CCDC196
GH14I066359 Enhancer 0.6 ENCODE 0.2 -52.1 -52086 0.2 CTCF ZNF654 ZNF362 NFIB ZNF384 RAD21 POLR2A SMC3 ZNF143 RUNX3 CCDC196 GC14P066230 ENSG00000258561
GH14I066379 Enhancer 0.4 ENCODE 0.3 -32.4 -32446 0.2 JUND ATF3 HNF4A ATP6V1D CCDC196 ENSG00000258561 GC14P066230
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC196 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC196 Gene

Genomic Locations for CCDC196 Gene
chr14:66,411,704-66,498,677
(GRCh38/hg38)
Size:
86,974 bases
Orientation:
Plus strand
chr14:66,953,072-66,965,271
(GRCh37/hg19)

Genomic View for CCDC196 Gene

Genes around CCDC196 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC196 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC196 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC196 Gene

Proteins for CCDC196 Gene

  • Protein details for CCDC196 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GTZ2-CC196_HUMAN
    Recommended name:
    Putative coiled-coil domain-containing protein 196
    Protein Accession:
    A0A1B0GTZ2

    Protein attributes for CCDC196 Gene

    Size:
    297 amino acids
    Molecular mass:
    34479 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC196 Gene

Post-translational modifications for CCDC196 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC196 Gene

Domains & Families for CCDC196 Gene

Gene Families for CCDC196 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC196 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC196: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC196 Gene

Function for CCDC196 Gene

Phenotypes for CCDC196 Gene

genes like me logo Genes that share phenotypes with CCDC196: view

Animal Model Products

miRNA for CCDC196 Gene

miRTarBase miRNAs that target CCDC196

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC196 Gene

Localization for CCDC196 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC196 Gene

Pathways & Interactions for CCDC196 Gene

SuperPathways for CCDC196 Gene

No Data Available

Interacting Proteins for CCDC196 Gene

Gene Ontology (GO) - Biological Process for CCDC196 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC196 Gene

Drugs & Compounds for CCDC196 Gene

No Compound Related Data Available

Transcripts for CCDC196 Gene

mRNA/cDNA for CCDC196 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC196 Gene

No ASD Table

Relevant External Links for CCDC196 Gene

GeneLoc Exon Structure for
CCDC196
ECgene alternative splicing isoforms for
CCDC196

Expression for CCDC196 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC196 Gene:

CCDC196
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC196 Gene

Orthologs for CCDC196 Gene

Evolution for CCDC196 Gene

ENSEMBL:
Gene Tree for CCDC196 (if available)
TreeFam:
Gene Tree for CCDC196 (if available)

No data available for Orthologs for CCDC196 Gene

Paralogs for CCDC196 Gene

No data available for Paralogs for CCDC196 Gene

Variants for CCDC196 Gene

Sequence variations from dbSNP and Humsavar for CCDC196 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000119037 -- 66,487,827(+) A/T intron_variant
rs1000156180 -- 66,488,480(+) A/C intron_variant
rs1000364766 -- 66,491,945(+) G/A intron_variant
rs1000648865 -- 66,493,823(+) T/C intron_variant
rs1000793940 -- 66,484,661(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC196 Gene

Variant ID Type Subtype PubMed ID
esv2748779 CNV deletion 23290073
nsv525460 CNV loss 19592680
nsv564953 CNV gain 21841781

Additional Variant Information for CCDC196 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC196

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC196 Gene

Disorders for CCDC196 Gene

No disorders were found for CCDC196 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC196 Gene

Publications for CCDC196 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R … Weissenbach J (Nature 2003) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CCDC196 Gene

Sources for CCDC196 Gene

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