Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC183-AS1 Gene

Subcategory (RNA class) for CCDC183-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC183-AS1 Gene

  • CCDC183 Antisense RNA 1 2 3 5
  • KIAA1984 Antisense RNA 1 (Non-Protein Coding) 2
  • KIAA1984 Antisense RNA 1 2
  • KIAA1984-AS1 3

External Ids for CCDC183-AS1 Gene

Previous HGNC Symbols for CCDC183-AS1 Gene

  • KIAA1984-AS1

Previous GeneCards Identifiers for CCDC183-AS1 Gene

  • GC09M139701

Summaries for CCDC183-AS1 Gene

GeneCards Summary for CCDC183-AS1 Gene

CCDC183-AS1 (CCDC183 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC183-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC183-AS1 Gene

Genomics for CCDC183-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC183-AS1 Gene

Promoters and enhancers for CCDC183-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I136806 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 557.9 +0.0 43 4.4 HDGF MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 CCDC183-AS1 RABL6 LOC100422233 EHMT1 NDOR1 CCDC183 ENSG00000272679 ENSG00000273066
GH09I136725 Promoter/Enhancer 1.6 Ensembl ENCODE 19.1 +81.4 81400 4.1 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 ZNF143 SP3 NFYC SSRP1 SNHG7 ENSG00000281808 SNORA17B SNORA17A GC09M136756 GC09M136755 GC09M136753 DPH7 EHMT1 ANAPC2
GH09I136884 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.6 -77.4 -77427 3.1 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B POLR2B E2F8 ZNF207 LOC105376326 TRAF2 MIR4479 EHMT1 SDCCAG3 ANAPC2 PHPT1 SNHG7 LOC651337 MAMDC4
GH09I136088 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +716.3 716274 7.9 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF766 ZNF143 DEK SP3 SP5 NACC2 MAN1B1 SDCCAG3 INPP5E SEC16A SNAPC4 UBAC1 QSOX2 SNHG7 CCDC183-AS1
GH09I136563 Enhancer 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 9.8 +240.3 240306 10.7 HDGF CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A YBX1 ZBTB7B IRF4 EXD3 INPP5E ANAPC2 QSOX2 SNHG7 SNAPC4 SDCCAG3 MAN1B1 SEC16A NOTCH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC183-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC183-AS1 Gene

Genomic Locations for CCDC183-AS1 Gene
chr9:136,803,927-136,808,848
(GRCh38/hg38)
Size:
4,922 bases
Orientation:
Minus strand
chr9:139,698,379-139,703,300
(GRCh37/hg19)

Genomic View for CCDC183-AS1 Gene

Genes around CCDC183-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC183-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC183-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC183-AS1 Gene

Proteins for CCDC183-AS1 Gene

Post-translational modifications for CCDC183-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC183-AS1 Gene

Domains & Families for CCDC183-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC183-AS1 Gene

Function for CCDC183-AS1 Gene

Phenotypes From GWAS Catalog for CCDC183-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC183-AS1 Gene

Localization for CCDC183-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC183-AS1 Gene

Pathways & Interactions for CCDC183-AS1 Gene

SuperPathways for CCDC183-AS1 Gene

No Data Available

Interacting Proteins for CCDC183-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC183-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC183-AS1 Gene

Drugs & Compounds for CCDC183-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC183-AS1 Gene

mRNA/cDNA for CCDC183-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC183-AS1 Gene

No ASD Table

Relevant External Links for CCDC183-AS1 Gene

GeneLoc Exon Structure for
CCDC183-AS1
ECgene alternative splicing isoforms for
CCDC183-AS1

Expression for CCDC183-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC183-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC183-AS1 Gene

This gene is overexpressed in Testis (x5.8) and Brain - Cerebellum (x4.1).
genes like me logo Genes that share expression patterns with CCDC183-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC183-AS1 Gene

Orthologs for CCDC183-AS1 Gene

Evolution for CCDC183-AS1 Gene

ENSEMBL:
Gene Tree for CCDC183-AS1 (if available)
TreeFam:
Gene Tree for CCDC183-AS1 (if available)

No data available for Orthologs for CCDC183-AS1 Gene

Paralogs for CCDC183-AS1 Gene

No data available for Paralogs for CCDC183-AS1 Gene

Variants for CCDC183-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC183-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000274682 -- 136,807,463(-) G/C intron_variant
rs1000881418 -- 136,806,278(-) T/A intron_variant
rs1001210274 -- 136,803,742(-) G/A downstream_transcript_variant
rs1001258309 -- 136,807,454(-) G/A intron_variant
rs1001262729 -- 136,803,854(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC183-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1246n67 CNV gain 20364138
esv2422220 CNV deletion 17116639
esv2759720 CNV loss 17122850
esv29973 CNV loss 17803354
esv3891732 CNV loss 25118596
nsv1119616 CNV deletion 24896259
nsv469918 CNV loss 18288195
nsv524322 CNV loss 19592680
nsv818738 CNV gain 17921354
nsv951204 CNV deletion 24416366

Additional Variant Information for CCDC183-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC183-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC183-AS1 Gene

Disorders for CCDC183-AS1 Gene

Additional Disease Information for CCDC183-AS1

No disorders were found for CCDC183-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC183-AS1 Gene

Publications for CCDC183-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for CCDC183-AS1 Gene

Sources for CCDC183-AS1 Gene

Content
Loading form....