Aliases for CCDC18-AS1 Gene

Data sources for CCDC18-AS1 Gene:

RNA type for CCDC18-AS1 Gene

lncRNA

Aliases for CCDC18-AS1 Gene

External Ids for CCDC18-AS1 Gene

Summaries for CCDC18-AS1 Gene

GeneCards Summary for CCDC18-AS1 Gene

CCDC18-AS1 (CCDC18 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CCDC18-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC18-AS1 Gene

Genomics for CCDC18-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCDC18-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC18-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCDC18-AS1 Gene

Latest Assembly
chr1:93,261,701-93,346,434
(GRCh38/hg38)
Size:
84,734 bases
Orientation:
Minus strand

Previous Assembly
chr1:93,775,666-93,811,368
(GRCh37/hg19 by Entrez Gene)
Size:
35,703 bases
Orientation:
Minus strand

chr1:93,727,743-93,811,582
(GRCh37/hg19 by Ensembl)
Size:
83,840 bases
Orientation:
Minus strand

Genomic View for CCDC18-AS1 Gene

Genes around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track
CCDC18-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CCDC18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC18-AS1 Gene

Proteins for CCDC18-AS1 Gene

Post-translational modifications for CCDC18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC18-AS1 Gene

Domains & Families for CCDC18-AS1 Gene

Gene Families for CCDC18-AS1 Gene

genes like me logo Genes that share domains with CCDC18-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC18-AS1 Gene

Function for CCDC18-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC18-AS1 Gene

Localization for CCDC18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC18-AS1 Gene

Pathways & Interactions for CCDC18-AS1 Gene

PathCards logo

SuperPathways for CCDC18-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC18-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCDC18-AS1 Gene

Drugs & Compounds for CCDC18-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC18-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CCDC18-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BA3EB_9606 lncRNA 753 4

Ensembl: ENST00000449305 (view in UCSC) ,

LncBook: HSALNT0010757,

LNCipedia: CCDC18-AS1:14,

NONCODE: NONHSAT004529.2,

URS00008B3CA2_9606 lncRNA 602 4

Ensembl: ENST00000440778 (view in UCSC) ,

LncBook: HSALNT0010715,

LNCipedia: CCDC18-AS1:25,

NONCODE: NONHSAT004511.2,

URS00008B598F_9606 lncRNA 600 4

Ensembl: ENST00000450843 (view in UCSC) ,

LncBook: HSALNT0010711,

LNCipedia: CCDC18-AS1:23,

NONCODE: NONHSAT004509.2,

URS00008B5870_9606 lncRNA 535 4

Ensembl: ENST00000432741 (view in UCSC) ,

LncBook: HSALNT0010727,

LNCipedia: CCDC18-AS1:27,

NONCODE: NONHSAT004516.2,

URS00008BCB14_9606 lncRNA 492 4

Ensembl: ENST00000436200 (view in UCSC) ,

LncBook: HSALNT0010723,

LNCipedia: CCDC18-AS1:30,

NONCODE: NONHSAT004513.2,

CCDC18-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CCDC18-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC18-AS1 Gene

No ASD Table

Relevant External Links for CCDC18-AS1 Gene

GeneLoc Exon Structure for
CCDC18-AS1

Expression for CCDC18-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCDC18-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC18-AS1 Gene

Orthologs for CCDC18-AS1 Gene

Evolution for CCDC18-AS1 Gene

ENSEMBL:
Gene Tree for CCDC18-AS1 (if available)
TreeFam:
Gene Tree for CCDC18-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CCDC18-AS1

No data available for Orthologs for CCDC18-AS1 Gene

Paralogs for CCDC18-AS1 Gene

No data available for Paralogs for CCDC18-AS1 Gene

Variants for CCDC18-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CCDC18-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CCDC18-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3383393 CNV insertion 20981092
esv3586828 CNV loss 21293372
nsv523951 CNV gain 19592680

Additional Variant Information for CCDC18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC18-AS1
Leiden Open Variation Database (LOVD)
CCDC18-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CCDC18-AS1 Gene

Disorders for CCDC18-AS1 Gene

Additional Disease Information for CCDC18-AS1

No disorders were found for CCDC18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC18-AS1 Gene

Publications for CCDC18-AS1 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu XY … Wang YP (BioMed research international 2015) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for CCDC18-AS1 Gene

Sources for CCDC18-AS1 Gene