Aliases for CCDC18-AS1 Gene

Subcategory (RNA class) for CCDC18-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for CCDC18-AS1 Gene

  • CCDC18 Antisense RNA 1 2 3 5
  • CCDC18-AS1 2 170
  • ENST00000440778.1 3
  • HSALNG0005250 169
  • NONHSAG002086 94

External Ids for CCDC18-AS1 Gene

Summaries for CCDC18-AS1 Gene

GeneCards Summary for CCDC18-AS1 Gene

CCDC18-AS1 (CCDC18 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CCDC18-AS1 include Scoliosis.

Additional gene information for CCDC18-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC18-AS1 Gene

Genomics for CCDC18-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC18-AS1 Gene

Promoters and enhancers for CCDC18-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC18-AS1 Gene

Genomic Locations for CCDC18-AS1 Gene
chr1:93,261,702-93,346,434
(GRCh38/hg38)
Size:
84,733 bases
Orientation:
Minus strand
chr1:93,727,743-93,811,582
(GRCh37/hg19)
Size:
83,840 bases
Orientation:
Minus strand

Genomic View for CCDC18-AS1 Gene

Genes around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC18-AS1 Gene

Proteins for CCDC18-AS1 Gene

Post-translational modifications for CCDC18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC18-AS1 Gene

Domains & Families for CCDC18-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC18-AS1 Gene

Function for CCDC18-AS1 Gene

Phenotypes From GWAS Catalog for CCDC18-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC18-AS1 Gene

Localization for CCDC18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC18-AS1 Gene

Pathways & Interactions for CCDC18-AS1 Gene

PathCards logo

SuperPathways for CCDC18-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC18-AS1 Gene

Drugs & Compounds for CCDC18-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC18-AS1 Gene

mRNA/cDNA for CCDC18-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(32) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(72) RNACentral transcripts :
(71) LNCipedia transcripts :
(53) LncBook transcripts :
(36) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC18-AS1 Gene

No ASD Table

Relevant External Links for CCDC18-AS1 Gene

GeneLoc Exon Structure for
CCDC18-AS1
ECgene alternative splicing isoforms for
CCDC18-AS1

Expression for CCDC18-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC18-AS1 Gene

Orthologs for CCDC18-AS1 Gene

Evolution for CCDC18-AS1 Gene

ENSEMBL:
Gene Tree for CCDC18-AS1 (if available)
TreeFam:
Gene Tree for CCDC18-AS1 (if available)

No data available for Orthologs for CCDC18-AS1 Gene

Paralogs for CCDC18-AS1 Gene

No data available for Paralogs for CCDC18-AS1 Gene

Variants for CCDC18-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC18-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000023515 -- 93,310,933(-) T/C non_coding_transcript_variant
rs1000093620 -- 93,314,928(-) T/G intron_variant
rs1000181023 -- 93,334,074(-) T/G intron_variant
rs1000255309 -- 93,325,092(-) T/G intron_variant
rs1000309153 -- 93,325,344(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC18-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3383393 CNV insertion 20981092
esv3586828 CNV loss 21293372
nsv523951 CNV gain 19592680

Additional Variant Information for CCDC18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC18-AS1 Gene

Disorders for CCDC18-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CCDC18-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
scoliosis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CCDC18-AS1

genes like me logo Genes that share disorders with CCDC18-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCDC18-AS1 Gene

Publications for CCDC18-AS1 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu XY … Wang YP (BioMed research international 2015) 2 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for CCDC18-AS1 Gene

Sources for CCDC18-AS1 Gene