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Aliases for CCDC18-AS1 Gene

Subcategory (RNA class) for CCDC18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC18-AS1 Gene

  • CCDC18 Antisense RNA 1 2 3 5
  • ENST00000440778.1 3

External Ids for CCDC18-AS1 Gene

Summaries for CCDC18-AS1 Gene

GeneCards Summary for CCDC18-AS1 Gene

CCDC18-AS1 (CCDC18 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC18-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC18-AS1 Gene

Genomics for CCDC18-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC18-AS1 Gene

Promoters and enhancers for CCDC18-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I093344 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 631.2 -1.5 -1518 5.9 HDGF PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 CCDC18-AS1 DR1 SNORD21 SNORA66 MTF2 DNTTIP2 CCDC18 EVI5 FNBP1L GC01M093359
GH01I093078 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 148.7 +265.6 265590 4.5 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 MTF2 CCDC18-AS1 SNORA66 SNORD21 TRR-TCT1-1 GLMN RPAP2 RPL5 DR1 DNTTIP2
GH01I093177 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 96.2 +166.1 166050 4.8 FEZF1 DMAP1 IRF4 YY1 ZNF213 ZNF416 ZNF143 ZNF548 ZNF263 SP3 CCDC18 GC01M093180 TMED5 CCDC18-AS1 SNORA66 SNORD21 RPL5 MIG7 DNTTIP2 RPAP2
GH01I092831 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 63.5 +512.6 512596 4.2 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 RPL5 GC01P092832 SNORA66 SNORD21 CCDC18-AS1 MTF2 MIG7 DR1 GLMN RPAP2
GH01I093844 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 39.6 -500.6 -500550 4.5 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC TRR-TCT1-1 BCAR3 GC01P093849 PIR62105 MIR760 GC01P093859 CCDC18-AS1 MTF2 MIG7 DR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC18-AS1 Gene

Genomic Locations for CCDC18-AS1 Gene
chr1:93,262,186-93,346,025
(GRCh38/hg38)
Size:
83,840 bases
Orientation:
Minus strand
chr1:93,727,743-93,811,582
(GRCh37/hg19)

Genomic View for CCDC18-AS1 Gene

Genes around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC18-AS1 Gene

Proteins for CCDC18-AS1 Gene

Post-translational modifications for CCDC18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC18-AS1 Gene

Domains & Families for CCDC18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC18-AS1 Gene

Function for CCDC18-AS1 Gene

Phenotypes From GWAS Catalog for CCDC18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC18-AS1 Gene

Localization for CCDC18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC18-AS1 Gene

Pathways & Interactions for CCDC18-AS1 Gene

SuperPathways for CCDC18-AS1 Gene

No Data Available

Interacting Proteins for CCDC18-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC18-AS1 Gene

Drugs & Compounds for CCDC18-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC18-AS1 Gene

mRNA/cDNA for CCDC18-AS1 Gene

(24) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC18-AS1 Gene

No ASD Table

Relevant External Links for CCDC18-AS1 Gene

GeneLoc Exon Structure for
CCDC18-AS1
ECgene alternative splicing isoforms for
CCDC18-AS1

Expression for CCDC18-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC18-AS1 Gene

Orthologs for CCDC18-AS1 Gene

Evolution for CCDC18-AS1 Gene

ENSEMBL:
Gene Tree for CCDC18-AS1 (if available)
TreeFam:
Gene Tree for CCDC18-AS1 (if available)

No data available for Orthologs for CCDC18-AS1 Gene

Paralogs for CCDC18-AS1 Gene

No data available for Paralogs for CCDC18-AS1 Gene

Variants for CCDC18-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC18-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000023515 -- 93,310,933(-) T/C non_coding_transcript_variant
rs1000093620 -- 93,314,928(-) T/G intron_variant
rs1000181023 -- 93,334,074(-) T/G intron_variant
rs1000255309 -- 93,325,092(-) T/G intron_variant
rs1000309153 -- 93,325,344(-) T/A intron_variant

Additional Variant Information for CCDC18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC18-AS1 Gene

Disorders for CCDC18-AS1 Gene

Additional Disease Information for CCDC18-AS1

No disorders were found for CCDC18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC18-AS1 Gene

Publications for CCDC18-AS1 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu XY … Wang YP (BioMed research international 2015) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CCDC18-AS1 Gene

Sources for CCDC18-AS1 Gene

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